Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26k20
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              26   0.25 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   4.0  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   5.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.3  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    21   9.3  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +1

Query: 406 PSCYNCNKTGHIARNCPEGGRESATXTCYNCNK 504
           P C  C    H  + CP+G +   T    N  K
Sbjct: 76  PICGACGDIAHTVKYCPKGTKNPGTLATVNAFK 108



 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +1

Query: 487 CYNCNKSGHISRNCPDGTK 543
           C  C    H  + CP GTK
Sbjct: 78  CGACGDIAHTVKYCPKGTK 96


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 64  SKEASHHHYKIVKDILSIDN 5
           SKE S+  Y+I+KD L + N
Sbjct: 203 SKECSNQEYEIMKDNLLLYN 222


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 154 EFSKPIAMSSSVCYKCNRTGHFAR 225
           +  KP+    +V Y   ++G+F+R
Sbjct: 165 DIGKPVVAEETVDYMLEKSGNFSR 188


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 519 PQLSRRHQDVLRVRQARPHLARVRR 593
           P+L+ R   V     ARPH + V R
Sbjct: 110 PELTNRKSVVFHHDNARPHTSLVTR 134


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 519 PQLSRRHQDVLRVRQARPHLARVRR 593
           P+L+ R   V     ARPH + V R
Sbjct: 232 PELTNRKGVVFHHDNARPHTSLVTR 256


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 569 PGLPHT*HVLVPSGQLREMWPDLLQL*QVCVADSRPP 459
           PGL      L+ SGQL  +  D     +   A+S+PP
Sbjct: 56  PGLAAVLQYLIRSGQLNIISSDHDDSDEEYAANSQPP 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,279
Number of Sequences: 438
Number of extensions: 3067
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)