Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26k15
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofacto...    47   3e-06
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    45   8e-06
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    42   8e-05
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    38   0.002
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    30   0.26 
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    29   0.78 
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    28   1.0  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    28   1.4  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    27   3.2  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    26   4.2  
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    26   4.2  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    26   5.5  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   5.5  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    26   5.5  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    25   9.7  

>SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofactor
           B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
 Frame = +2

Query: 206 FGTVRYIGEVQGYKG--LWYGIEWDNESRGKHDGCLDGIQYFKTSKPSAGSFVRPNKI 373
           +GT+RYIG V       LW G+E+D E  GK+DG + G +YF  +K   GSF+R +++
Sbjct: 165 YGTIRYIGLVPEINNDNLWVGVEFD-EPVGKNDGTVSGKRYF-NAKNKHGSFLRSSEV 220


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 45.2 bits (102), Expect = 8e-06
 Identities = 23/62 (37%), Positives = 32/62 (51%)
 Frame = +2

Query: 176 IGSRVKCNDDFGTVRYIGEVQGYKGLWYGIEWDNESRGKHDGCLDGIQYFKTSKPSAGSF 355
           +G  V    + G VR+ G      G+W G+E  N  +GK+DG + G +YF   K   G F
Sbjct: 6   VGDEVLIRGELGIVRFAGSTDFESGIWLGVELLN-GKGKNDGSVKGKRYFSCEK-GKGIF 63

Query: 356 VR 361
           VR
Sbjct: 64  VR 65


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
 Frame = +2

Query: 209 GTVRYIGEVQGYKGLWYGIEWDNE--SRGKHDGCLDGIQYFKT-SKPSAGSFV 358
           G VRY GEV+  KG++ G+E   E    GK+ G +DG +YFKT +    G FV
Sbjct: 16  GFVRYAGEVENRKGVYVGLELLPEFAEFGKNRGVVDGREYFKTKNNEKTGIFV 68


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = +2

Query: 497 IEMVGFEKIHQKQKFDRLLEVCVHD----QNVSRAGDVSSLCPNVRSLDVSRNLF 649
           +E  GFEKI  KQ+  + L V + D    +++    + S + P V  LD+SRNLF
Sbjct: 99  VEFCGFEKIQSKQRDLKSLRVIILDNYRIEDIEIEYEYSKILPEVIDLDLSRNLF 153


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 248 GLWYGI---EWDNESRGKHDGCLDGIQYFKTSKPSAGSFVRPNKIIPSK 385
           GL + I    WD  S G    C    Q+F    P+A +F+ P ++ P++
Sbjct: 420 GLMFAILAGSWDTISTGGRFACFVIAQFFSNFGPNATTFLYPAEVFPAR 468


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +2

Query: 65  EPAKIMVGAMPVNLLPKFC--NGAMDS 139
           EP+K+ +G +P+ L   FC  NG  DS
Sbjct: 146 EPSKVFIGKIPIMLRSTFCILNGVSDS 172


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 469 FIDDGSAVSS*CFILRITIILSDGFRASLR-WDDLVWTNKRTGT 341
           F    SAVS  CF  R  ++ S     S+R WD + + N RT T
Sbjct: 377 FTQHTSAVSGLCFSKRGNVLFSSSLDGSVRAWDLIRYRNFRTFT 420


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 269 WDNESRGKHDGCLDGIQYFKTSKPSAGSFVRPNKIIPSKTCA 394
           W+  S G    C+   Q+F    P+   FV P ++ PS+  A
Sbjct: 451 WETISTGGRFACVALAQFFFNFGPNTTCFVIPAEVFPSRVRA 492


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 483 WERLSLKWLVLKKYTKNRNL 542
           WE L LKW +  K+++N+NL
Sbjct: 240 WEHLKLKWRI--KHSRNKNL 257


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 415 IILSDGFRASLRWDDLVWTNKRTGTRFGS 329
           +I+ DG R   +   L+W +K     FGS
Sbjct: 44  VIVGDGSRVPRKQSQLIWNSKEVKQYFGS 72


>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 328 LEVLDTI*APVVLASGLVVPLYAVP*SLVALNLTNIPNSPEIVV 197
           LEVLD      +L+ GL   +YA+P S++ L+    P S  + +
Sbjct: 173 LEVLDHRLYTYLLSKGLTAKIYALP-SILTLSACTAPLSEALTI 215


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
 Frame = +2

Query: 215 VRYIGE-VQGYKGLWYGIEWDNESRGKHD-GCLD--GIQYFKTSKPSAGSFVRPNKIIPS 382
           VR I E   GY+ +   I+W N+   + D G ++  G QY K S     S  R N +   
Sbjct: 438 VRGIREYAPGYENIPAFIKWPNDVYVRVDKGGINFQGKQYMKLSGIIVTSNYRKNVLHLV 497

Query: 383 KTCAEAIRQYYGDPEDETLAAHRRTIINEWKREMGAPFIEMVGFEKIHQK--QKFDR 547
             C   +          T++ +  T+++EW +    P +E   FEK+      +FDR
Sbjct: 498 VGCGINVSNL-----GPTVSLN--TLVDEWNKNSDNPRLEKFSFEKLLASVLNQFDR 547


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 17  VQEISLFSFQQNILIFEPAKIMVGAMPVNLLPK 115
           V + S FS   +  I  PAK +VG+ PV++L K
Sbjct: 284 VSQPSDFSASPSRSIVSPAKNIVGSTPVDVLSK 316


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 389 CAEAIRQYYGDPEDETLAA-HRRTIINEWKREMGAPFIEMVGFEKIHQKQKFDRLLEVCV 565
           C   I +Y  DPE   + A HR  +++  K +   P  +     KIHQ  K   L +V V
Sbjct: 258 CVAGILEY--DPEFPNIKANHREYLMDSKKFKQVVPIQDPRILAKIHQTFKLQYLRDVVV 315


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 564 THTSSKRSNFCFWCIFSKPTISMKGAPISLFHSLMMVLR 448
           T+T+ +     FW IFS P I  K  P  +   +  +L+
Sbjct: 337 TNTNVEYITMAFWAIFSLPMI-QKALPKGVLEEIQSLLK 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,979
Number of Sequences: 5004
Number of extensions: 68028
Number of successful extensions: 173
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)