Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26k15
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0038 + 260080-260380,260852-261022,261764-261810,262266-26... 94 1e-19
01_01_0058 + 440328-440437,440514-440733,441605-441805,441915-44... 31 0.61
04_03_0184 + 12395349-12395542,12396821-12397467,12398119-123986... 31 0.81
06_03_0416 + 20568087-20568702,20568767-20570313 29 2.5
03_02_0979 + 12897107-12897352 29 2.5
06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178 29 3.3
02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243 29 4.3
06_01_0476 - 3388176-3389267 28 5.7
02_02_0648 - 12619468-12619874,12621432-12621512,12621607-126217... 28 5.7
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 28 7.6
01_01_0549 - 4051257-4051709,4051967-4052075,4053194-4053252,405... 28 7.6
>05_01_0038 +
260080-260380,260852-261022,261764-261810,262266-262412,
262495-262569,262826-262935,263032-263159,263368-263429,
263599-263748,263827-263861,264083-264151,264538-264629,
264718-264794,265434-265532
Length = 520
Score = 93.9 bits (223), Expect = 1e-19
Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 7/168 (4%)
Frame = +2
Query: 176 IGSRVKCNDD---FGTVRYIGEVQGYKGLWYGIEWDNESRGKHDGCLDGIQYFKTSKPSA 346
+G RV D GTVRY+G V G+ G W G++WD + G+HDG L G +YF + +
Sbjct: 8 LGQRVHAAGDPARVGTVRYLGPVDGHPGDWLGVDWDAGAGGRHDGSLAGRRYFVAAGERS 67
Query: 347 GSFVRPNKIIPSKTCAEAIRQYYGDPEDETLAAHRRTIINEWKREMGAPFIEMVGFEKIH 526
SF RP + T +AIR Y E + + ++ + +E+VG K+
Sbjct: 68 ASFARPTALSAGITLPDAIRNRYRVEEFTKEEQDEMYVFSSSQKRVS---VELVGKNKVE 124
Query: 527 QKQK-FDRLLEVCVHDQNVSRAG---DVSSLCPNVRSLDVSRNLFSNW 658
+K K + L V VS G ++ +L PN+R LD++ NL S W
Sbjct: 125 EKLKNLNDLTSASVSYMGVSSIGPGDELKNLVPNLRQLDLTGNLLSQW 172
>01_01_0058 +
440328-440437,440514-440733,441605-441805,441915-441985,
442058-442217,444166-444492,444529-444759,444869-445249,
445573-445648,445736-445799,446334-446469,447666-447710,
447851-447916
Length = 695
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +1
Query: 352 FCSSKQDHPIEDLRGSHPTILW*SGG*NISCSP 450
F SK+D IE L GSHPT+L+ GG NIS +P
Sbjct: 454 FIMSKRD--IE-LDGSHPTLLYGYGGFNISLTP 483
>04_03_0184 +
12395349-12395542,12396821-12397467,12398119-12398655,
12399087-12399239,12399315-12399809,12400032-12400555
Length = 849
Score = 31.1 bits (67), Expect = 0.81
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Frame = +2
Query: 119 CNGAMDSCNGVDGNDNNVYIGSRVKCNDDFGTVRY-------IGEVQGYKGLWYGIEWDN 277
C A +C GV+ D Y+G R KC D F Y + E + G++ GI +N
Sbjct: 421 CVSANSTCLGVNSTDG--YVGYRCKCMDGFHGNPYDANGCEDVDECKKTPGIFKGICHNN 478
Query: 278 ESRGKHDGCLDGIQYFKTS 334
+ CLD +Y T+
Sbjct: 479 IGSYQCMECLDKTEYDVTA 497
>06_03_0416 + 20568087-20568702,20568767-20570313
Length = 720
Score = 29.5 bits (63), Expect = 2.5
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Frame = -2
Query: 481 FPLPFIDDGSAVSS*CFILRITII-LSDGFRASLRWDDLVWTNKRTGTRFGSLEVLDTI* 305
F F GSA S +I I + +S F LRW ++VW R + V T
Sbjct: 54 FACGFFCAGSATSCDAYIFSIFFVYVSTDFSQRLRWPEIVWFANRDHPVGENATVQFTEL 113
Query: 304 APVVL--ASG-LVVPLYAVP*SLVALNLTNIPN 215
+VL A G LV S+V++NLT N
Sbjct: 114 GDLVLYDADGTLVWSTNTANKSVVSMNLTGSGN 146
>03_02_0979 + 12897107-12897352
Length = 81
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 314 YHLSTRRACLWTRCPTLCRTIIPCSPEPHQY 222
YH+S RR LW R P L R + P P+ Q+
Sbjct: 42 YHVSLRRPTLWPRQPFLPR-VAPAPPDNGQW 71
>06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178
Length = 518
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +2
Query: 530 KQKFDRLLEVCVHDQNVS--RAGDVSSLCPNVRSLDV 634
+Q+F+ L E+C H ++ +V + CPN+R LD+
Sbjct: 200 QQRFNELSEICFHFVSIESYMLRNVITRCPNLRVLDL 236
>02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243
Length = 523
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 56 LIFEPAKIMVGAMPVNLLPKF 118
++++PAK VGA+P + PKF
Sbjct: 244 IVYDPAKHSVGALPAMVTPKF 264
>06_01_0476 - 3388176-3389267
Length = 363
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 147 ASMETIITSILVVV*NVTTISGLLGILVRFRATRDYGTA*SGTTSPEAS 293
A + + +LV++ V +SGLL +LVRF R G G EA+
Sbjct: 24 ARISPAVVFVLVILAVVLFVSGLLHLLVRFLLRRGRGRDGGGGGDAEAA 72
>02_02_0648 -
12619468-12619874,12621432-12621512,12621607-12621716,
12621896-12622164,12622440-12622567,12622637-12622699,
12623196-12623493
Length = 451
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 305 STRRACLWTRCPTLCR 258
ST RA LW RC T CR
Sbjct: 388 STARAALWPRCMTRCR 403
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 308 LSTRRACLWTRCPTLC 261
LST+ C+W CP LC
Sbjct: 231 LSTKWRCIWLTCPRLC 246
>01_01_0549 -
4051257-4051709,4051967-4052075,4053194-4053252,
4053339-4053445,4053711-4053867,4054110-4054169,
4055396-4055524,4056027-4056074,4057148-4057214,
4057948-4058006
Length = 415
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 143 NGVDGNDNNVYIGSRV--KCNDDFGTVRYIGEVQG 241
+ V G + +Y+ +++ KC+DDF VR++ G
Sbjct: 333 DSVKGGEGAIYLWAKLPEKCSDDFEVVRWLANKHG 367
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,141,352
Number of Sequences: 37544
Number of extensions: 438778
Number of successful extensions: 1151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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