Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26k14
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical ...    33   0.26 
Z49909-16|CAB60995.1|  418|Caenorhabditis elegans Hypothetical p...    32   0.34 
U00040-2|AAA50667.4|  366|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne...    29   4.2  

>AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical
           protein Y48B6A.6a protein.
          Length = 687

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 21/65 (32%), Positives = 33/65 (50%)
 Frame = +2

Query: 50  KLPVYAKYLEFDDVVLDLTSLIFLEFDNDQNEEYIIFMNVKRAFYKNFHITCDLSLETLT 229
           K+ +YA++ EF    +   S IF ++D DQ + YI F  +KR   K       ++L+ L 
Sbjct: 528 KISLYAEFSEFSRKQIQYFSGIFKKYDEDQ-DSYIDFNELKRMMEKLGEAQTHIALKELI 586

Query: 230 VLVYE 244
             V E
Sbjct: 587 KKVDE 591


>Z49909-16|CAB60995.1|  418|Caenorhabditis elegans Hypothetical
           protein C14A4.14 protein.
          Length = 418

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
 Frame = +2

Query: 293 FVDFISFNATDNDNSMIIDLCSDARIIVAKKLTPDETYHQRVSGFLDFQKRNW-IPRPPI 469
           F D I+F+ATD D ++++    D  +  A    P+E  H R++    +QK N  +  PP+
Sbjct: 132 FTD-ITFDATDQDRTVVVRE-PDGTLRTAN---PEE--HDRMNRTY-YQKPNRSVNPPPL 183

Query: 470 ESDPKVRNVLDR 505
            SDP ++N LD+
Sbjct: 184 FSDPNLQNALDK 195


>U00040-2|AAA50667.4|  366|Caenorhabditis elegans Hypothetical
           protein C18H2.2 protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +2

Query: 278 EQPPNFVDFISFNATDNDNSMIIDLCSDARIIVAKKLTPDETYHQRVSGFLDFQKRNWIP 457
           E+P +  D+ + +  +N+NS ++    D  +  +   + D + H R SG    Q R + P
Sbjct: 200 EEPQS--DYSNIDNVENENSALVT-SKDDELFESSMTSFDTSTHSRSSGRKRTQTRPYSP 256

Query: 458 RPPIESDPKV 487
            P   S P +
Sbjct: 257 TPDSVSKPLI 266


>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
            neurexin-like protein 1 protein.
          Length = 1655

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +2

Query: 71   YLEFDDVVLDLTSLIFLEFDNDQNEEYIIFMNVKRAFYKNFHITCDLSLETLTV 232
            YL+FDDV   L + I+  F  D+    + F + +   +   H++ ++++ TLT+
Sbjct: 922  YLKFDDVKNVLNAPIYFSFRTDRTHALLFFAHDQNNNFLQVHLSEEVNV-TLTL 974


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,830,308
Number of Sequences: 27780
Number of extensions: 251426
Number of successful extensions: 754
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)