Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26k12
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.80 
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   1.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.5  

>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 487 QTMSIFGKSMFFSWATMCCVFTCWETV 567
           Q   IF K++ F   ++CC FTC+ ++
Sbjct: 75  QRKLIFNKAIDFKLNSLCCSFTCYPSI 101


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 273  LNYV-TVRVWSSKRSPETFLKQPFWLGSLKEKWSCCHV 383
            LNY  T   W +  +P   L++P W G+  +KW   H+
Sbjct: 906  LNYGGTYSKWKTVSTPSEKLRKPTWNGTNLQKWDGDHL 943


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 409 HTLQKATVSNSFSFRHVYKKKSKFQGQTMSIFGKSMFFSW 528
           HTL KA   NSF F  ++   S   G+  S    S F +W
Sbjct: 205 HTLTKAISENSFDFLSIHTFNSS-TGEGCSGSRNSTFDAW 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,057
Number of Sequences: 5004
Number of extensions: 55876
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)