Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26k12
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0067 + 8756044-8756075,8756180-8756357,8756800-8757471           31   0.83 
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457           29   2.5  
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200...    28   5.9  
01_01_0361 + 2838979-2841745,2841897-2842285                           28   7.7  

>10_05_0067 + 8756044-8756075,8756180-8756357,8756800-8757471
          Length = 293

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +1

Query: 370 PAATYSDDTIRFYHTLQKATVSNSFSFRHVYKKKSKFQGQTMSIFGKSMFFSWATMCCVF 549
           PA    +DTI     + K T +  ++ +  Y+ +  F G T S F ++++  WA   C F
Sbjct: 186 PAFNEHEDTI-----IWKLTANGVYTTKLAYRLQ--FIGATRSTFNETIWKCWAPPKCKF 238

Query: 550 TCWETVESICV 582
             W  ++ IC+
Sbjct: 239 FAWLVIQ-ICI 248


>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
          Length = 438

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +1

Query: 346 WEV*RKSGPAATYSDDTIRFYHTLQKATVSNSFSFRHVYKKKSKFQGQTMSIFGKSMFFS 525
           W + R+  P  T   D+I +       T +  +S +  Y+ +  F G T S F ++++ +
Sbjct: 229 WTMIRRMNPL-TEDQDSIHW-----DLTANGQYSAKSAYRLQ--FLGATRSAFNQTIWKA 280

Query: 526 WATMCCVFTCW 558
           WA   C F  W
Sbjct: 281 WAPPKCKFFSW 291


>09_06_0311 +
           22218219-22218421,22219157-22219422,22219881-22220050,
           22220149-22220365,22220798-22221021,22221559-22221738,
           22221875-22222013,22222107-22222255,22223394-22223505,
           22223998-22224506,22224661-22224784,22224904-22225178,
           22225507-22225626,22225707-22225769,22225861-22226052,
           22226381-22226440,22226535-22226738,22226926-22227051,
           22227093-22227254,22227357-22227476,22227665-22227820,
           22227895-22227957,22228041-22228168,22228524-22228920,
           22229442-22229544,22229646-22229776,22230096-22230167,
           22230472-22230553,22231083-22231190,22231288-22231429,
           22231659-22231698,22231746-22231876,22232215-22232301,
           22232395-22232605,22232687-22232741,22232836-22232927,
           22233011-22233071,22233361-22233719
          Length = 2010

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 512 LCFSHGQLCVACSRVGKP--SNLFVLAKDRLTKNIVHRLV 625
           LCFS      A S VG P  ++L VL   R+TK + HRL+
Sbjct: 24  LCFS---AAAAASPVGGPHMADLSVLLPPRMTKPVEHRLI 60


>01_01_0361 + 2838979-2841745,2841897-2842285
          Length = 1051

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 426  SLLKGMVESDGIIGIRGSRTTFPLNFPAKMVASRM 322
            S++K +  SD I+GIRGS    P  +      SR+
Sbjct: 899  SIVKALQHSDSIVGIRGSIGYIPPEYGEGSAVSRL 933


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,958,252
Number of Sequences: 37544
Number of extensions: 309817
Number of successful extensions: 553
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)