Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26k12
         (669 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ437529-1|ABD92708.1|  641|Homo sapiens DNA helicase PIF1 protein.    32   1.6  
AY498716-1|AAS77398.1|  641|Homo sapiens PIF1/RRM3 DNA helicase-...    32   1.6  
AF108138-1|AAD44047.1|  374|Homo sapiens DNA helicase homolog pr...    32   1.6  
AB185927-1|BAE47455.1|  707|Homo sapiens PIF1 DNA helicase isofo...    32   1.6  
AB185926-1|BAE47454.1|  641|Homo sapiens PIF1 DNA helicase isofo...    32   1.6  

>DQ437529-1|ABD92708.1|  641|Homo sapiens DNA helicase PIF1 protein.
          Length = 641

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 22/57 (38%), Positives = 27/57 (47%)
 Frame = +2

Query: 422 RLQFPIRLAFAMSIKKSLNFKVKQCPYLENLCFSHGQLCVACSRVGKPSNLFVLAKD 592
           R Q P++LA+AMSI KS    +          F+ GQ  VA SR      L VL  D
Sbjct: 541 RQQLPLQLAWAMSIHKSQGMTLDCVEISLGRVFASGQAYVALSRARSLQGLRVLDFD 597


>AY498716-1|AAS77398.1|  641|Homo sapiens PIF1/RRM3 DNA
           helicase-like protein protein.
          Length = 641

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 22/57 (38%), Positives = 27/57 (47%)
 Frame = +2

Query: 422 RLQFPIRLAFAMSIKKSLNFKVKQCPYLENLCFSHGQLCVACSRVGKPSNLFVLAKD 592
           R Q P++LA+AMSI KS    +          F+ GQ  VA SR      L VL  D
Sbjct: 541 RQQLPLQLAWAMSIHKSQGMTLDCVEISLGRVFASGQAYVALSRARSLQGLRVLDFD 597


>AF108138-1|AAD44047.1|  374|Homo sapiens DNA helicase homolog
           protein.
          Length = 374

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 22/57 (38%), Positives = 27/57 (47%)
 Frame = +2

Query: 422 RLQFPIRLAFAMSIKKSLNFKVKQCPYLENLCFSHGQLCVACSRVGKPSNLFVLAKD 592
           R Q P++LA+AMSI KS    +          F+ GQ  VA SR      L VL  D
Sbjct: 274 RQQLPLQLAWAMSIHKSQGMTLDCVEISLGRVFASGQAYVALSRARSLQGLRVLDFD 330


>AB185927-1|BAE47455.1|  707|Homo sapiens PIF1 DNA helicase isoform
           beta protein.
          Length = 707

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 22/57 (38%), Positives = 27/57 (47%)
 Frame = +2

Query: 422 RLQFPIRLAFAMSIKKSLNFKVKQCPYLENLCFSHGQLCVACSRVGKPSNLFVLAKD 592
           R Q P++LA+AMSI KS    +          F+ GQ  VA SR      L VL  D
Sbjct: 541 RQQLPLQLAWAMSIHKSQGMTLDCVEISLGRVFASGQAYVALSRARSLQGLRVLDFD 597


>AB185926-1|BAE47454.1|  641|Homo sapiens PIF1 DNA helicase isoform
           alpha protein.
          Length = 641

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 22/57 (38%), Positives = 27/57 (47%)
 Frame = +2

Query: 422 RLQFPIRLAFAMSIKKSLNFKVKQCPYLENLCFSHGQLCVACSRVGKPSNLFVLAKD 592
           R Q P++LA+AMSI KS    +          F+ GQ  VA SR      L VL  D
Sbjct: 541 RQQLPLQLAWAMSIHKSQGMTLDCVEISLGRVFASGQAYVALSRARSLQGLRVLDFD 597


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,075,549
Number of Sequences: 237096
Number of extensions: 1776572
Number of successful extensions: 2754
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2754
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)