Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26k03
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    28   0.55 
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    25   6.7  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    25   6.7  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    24   8.9  

>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = +2

Query: 140 PRDAPVFE*PQLGMEFAILSPFANTTAQEINHMKFILRNPV--QSYQPYRSRRLHSDVKR 313
           P  +  FE PQLG       P +NT     +    + R P+   S+   RS R++   + 
Sbjct: 32  PNQSMTFEKPQLGQFVLTPEPSSNTFYAPSSPASAVRREPLSPMSFVRMRSHRVNKIGRS 91

Query: 314 GRHYSARLQTLRK-LHRLHCI 373
            +     L T+ K + R+H I
Sbjct: 92  SQQCDHVLSTVDKAISRVHAI 112


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +2

Query: 170 QLGMEFAILSPFANTTAQEINHMKFILRNPVQSYQPYRSRRLH 298
           Q+ M+F  ++P  NT+  +  + + I+  P   +Q     RL+
Sbjct: 551 QVAMKFKTITPSVNTSEDDSANDQEIISTPNSDFQQLSLSRLY 593


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 183 SIPS*GHSKTGASLGTARPKSNDTRH 106
           SIP   H  TGA +  A PK  + +H
Sbjct: 392 SIPCCVHDLTGAKISWALPKPRNPKH 417


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 187 ELHSKLRSLEDGGVSGNCASEVQRHEAQTCFEDSR 83
           +LHS  +SLE  G+  +   +    E Q+  ED+R
Sbjct: 834 DLHSLQKSLEKSGIEYSSRIKTLMLEKQSLSEDNR 868


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,735,346
Number of Sequences: 5004
Number of extensions: 31592
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)