Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26k03
(438 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0690 - 5903578-5904567,5905269-5905468,5905562-5906618 28 2.9
12_02_0005 + 12192100-12192474 25 4.0
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 27 5.0
06_01_1152 + 9740279-9740374,9740530-9740940 27 5.0
01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883 27 5.0
04_03_0191 - 12452369-12452499,12452875-12453077,12453641-124538... 27 6.6
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 27 6.6
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 27 6.6
12_02_1062 - 25763269-25764141 27 8.7
09_03_0179 - 13131404-13131514,13131834-13131920,13132316-131324... 27 8.7
04_04_0326 - 24407201-24407374,24407397-24407460,24408266-244086... 27 8.7
03_02_0472 - 8737955-8738580,8738704-8738767,8739090-8739239,873... 27 8.7
01_04_0049 - 15422996-15423407,15423954-15424114 27 8.7
>12_01_0690 - 5903578-5904567,5905269-5905468,5905562-5906618
Length = 748
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -3
Query: 181 HSKLRSLE---DGGVSGNCASEVQRHEAQTCFEDSRNFSGIL 65
H KLR ++ + G+SGN + Q + F S NF+G L
Sbjct: 314 HKKLRMIDLSKNPGISGNLPNFSQESSLENLFVSSTNFTGSL 355
>12_02_0005 + 12192100-12192474
Length = 124
Score = 25.0 bits (52), Expect(2) = 4.0
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -3
Query: 181 HSKLRSLEDGGVSG 140
HS+ ++EDGGVSG
Sbjct: 45 HSRAAAIEDGGVSG 58
Score = 21.4 bits (43), Expect(2) = 4.0
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 166 SLEDGGVSGNCAS 128
++EDGGV G+ AS
Sbjct: 60 TVEDGGVGGSMAS 72
>11_04_0236 + 15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 255 FRNMNFIWFISCAVVFANGERIANSIPS 172
F NM F+W SC V +A +P+
Sbjct: 2432 FWNMRFLWMSSCRVTMTGCRYVAQQMPN 2459
>06_01_1152 + 9740279-9740374,9740530-9740940
Length = 168
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 187 RNPLTVREHDGARDKPYEVH 246
R L +RE++G RD+P VH
Sbjct: 70 RRELQLREYEGVRDEPQRVH 89
>01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883
Length = 424
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 139 NCASEVQRHEAQTCFEDSRNFSGILLEP 56
+C+ ++Q E C E + NFSG EP
Sbjct: 372 SCSRQLQHQEGIACHEKAYNFSGWWSEP 399
>04_03_0191 -
12452369-12452499,12452875-12453077,12453641-12453835,
12454301-12454809
Length = 345
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +3
Query: 63 SSIPEKLRESSKQVCASCRWTSDAQFPET 149
S + K+ +++ C+ +W DAQ P T
Sbjct: 303 SVVAGKISRAARTACSDAKWVVDAQVPAT 331
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 242 FILRNPVQSYQPYRSRRLHSDVKRGRH 322
FI++ P + + R+RR H ++GRH
Sbjct: 49 FIIKKPQKIHSRSRARRAHEAKQKGRH 75
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 242 FILRNPVQSYQPYRSRRLHSDVKRGRH 322
FI++ P + + R+RR H ++GRH
Sbjct: 49 FIIKKPQKIHSRSRARRAHEAKQKGRH 75
>12_02_1062 - 25763269-25764141
Length = 290
Score = 26.6 bits (56), Expect = 8.7
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = -2
Query: 335 GGRCSVSLVLRLNGAAYFDRA----DNSELDSAI*TSYGLSLAPSCSRTVRGLR 186
G + +L+L+ N A DR+ D S +A +++ +S+ PSC+RTV R
Sbjct: 55 GSNSTAALILQGNDATTTDRSYTVVDGSFNSTA--STFTVSVPPSCNRTVSDAR 106
>09_03_0179 -
13131404-13131514,13131834-13131920,13132316-13132448,
13133079-13133319,13133423-13133540,13133546-13133731,
13133864-13134049,13134443-13134652,13135171-13135347,
13135823-13135964,13136385-13136927,13137565-13138022
Length = 863
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 112 EAQTCFEDSRNFSGILLEPYD 50
EAQ CFED R G++ E Y+
Sbjct: 784 EAQRCFEDCRRVRGLVDEWYE 804
>04_04_0326 -
24407201-24407374,24407397-24407460,24408266-24408689,
24408885-24409057,24409178-24409275,24409723-24409853,
24410053-24410174,24411091-24411245,24411976-24412081,
24412328-24412419,24412499-24412620,24413444-24413544,
24413636-24413849,24414173-24414311,24415228-24415584
Length = 823
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 365 VIDVIYGASVGGRCSVSLVLRLNGAAYFDRADNSELDSAI 246
V ++ R S++ +LRL AA +DNS D+A+
Sbjct: 544 VTTIVCNDEFSSRLSINSILRLRSAAIRALSDNSPADTAM 583
>03_02_0472 -
8737955-8738580,8738704-8738767,8739090-8739239,
8739311-8739422,8739686-8739708
Length = 324
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 263 QSYQPYRSRRLHSDVKRGRHYS 328
+SY PY RR +S +R R YS
Sbjct: 154 RSYSPYNRRRSYSPYERRRSYS 175
>01_04_0049 - 15422996-15423407,15423954-15424114
Length = 190
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 162 SKTGASLGTARPKSNDTRHRLVLKILATSPVYCWNHTILGCAYRRSQV 19
S T A+ T RP + RHRLVL++L GC R +V
Sbjct: 57 SGTSAAASTGRP--HQRRHRLVLRLLRLQAARGSTRCSQGCPSDRRRV 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,344,813
Number of Sequences: 37544
Number of extensions: 207208
Number of successful extensions: 546
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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