Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26k03
         (438 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC028689-1|AAH28689.2| 1050|Homo sapiens tripartite motif-contai...    32   0.75 
AK127592-1|BAC87048.1|  549|Homo sapiens protein ( Homo sapiens ...    32   0.75 
AF119042-1|AAD17258.1| 1016|Homo sapiens transcriptional interme...    32   0.75 
AF009353-1|AAB63585.1| 1012|Homo sapiens transcription intermedi...    32   0.75 

>BC028689-1|AAH28689.2| 1050|Homo sapiens tripartite
           motif-containing 24 protein.
          Length = 1050

 Score = 32.3 bits (70), Expect = 0.75
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 24  DCAYKHILESY---GSSSIPEKLRESSKQVCASCRWTSDA 134
           +CA +HI++++    ++ +P    E S QVC SC   ++A
Sbjct: 133 ECAERHIIDNFFVKDTTEVPSSTVEKSNQVCTSCEDNAEA 172


>AK127592-1|BAC87048.1|  549|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45687 fis, clone FCBBF3020030, highly  similar
           to Transcription intermediary factor 1-alpha. ).
          Length = 549

 Score = 32.3 bits (70), Expect = 0.75
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 24  DCAYKHILESY---GSSSIPEKLRESSKQVCASCRWTSDA 134
           +CA +HI++++    ++ +P    E S QVC SC   ++A
Sbjct: 91  ECAERHIIDNFFVKDTTEVPSSTVEKSNQVCTSCEDNAEA 130


>AF119042-1|AAD17258.1| 1016|Homo sapiens transcriptional
           intermediary factor 1 alpha protein.
          Length = 1016

 Score = 32.3 bits (70), Expect = 0.75
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 24  DCAYKHILESY---GSSSIPEKLRESSKQVCASCRWTSDA 134
           +CA +HI++++    ++ +P    E S QVC SC   ++A
Sbjct: 133 ECAERHIIDNFFVKDTTEVPSSTVEKSNQVCTSCEDNAEA 172


>AF009353-1|AAB63585.1| 1012|Homo sapiens transcription intermediary
           factor 1 protein.
          Length = 1012

 Score = 32.3 bits (70), Expect = 0.75
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 24  DCAYKHILESY---GSSSIPEKLRESSKQVCASCRWTSDA 134
           +CA +HI++++    ++ +P    E S QVC SC   ++A
Sbjct: 129 ECAERHIIDNFFVKDTTEVPSSTVEKSNQVCTSCEDNAEA 168


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,626,620
Number of Sequences: 237096
Number of extensions: 1051946
Number of successful extensions: 2430
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2430
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)