Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26k03
         (438 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ277185-1|CAB85480.1|  536|Drosophila melanogaster mod(mdg4)58....    29   2.1  
AE014297-2979|AAF55883.2|  536|Drosophila melanogaster CG32491-P...    29   2.1  
AE014134-3376|AAF53987.1| 1008|Drosophila melanogaster CG8671-PA...    27   8.4  

>AJ277185-1|CAB85480.1|  536|Drosophila melanogaster mod(mdg4)58.6
           protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = +2

Query: 281 RSRRLHSDVKRGRHYSARLQTLRKLHRL 364
           ++  LH+++KR ++ S++ QTLR  H++
Sbjct: 479 KAEHLHAELKRNKYSSSKAQTLRDPHQM 506


>AE014297-2979|AAF55883.2|  536|Drosophila melanogaster CG32491-PF,
           isoform F protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = +2

Query: 281 RSRRLHSDVKRGRHYSARLQTLRKLHRL 364
           ++  LH+++KR ++ S++ QTLR  H++
Sbjct: 479 KAEHLHAELKRNKYSSSKAQTLRDPHQM 506


>AE014134-3376|AAF53987.1| 1008|Drosophila melanogaster CG8671-PA,
           isoform A protein.
          Length = 1008

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = -3

Query: 169 RSLEDGGVSGNCASE----VQRHEAQTCFEDSRNFSGILLEPYDSRMCL*AQSSGSG 11
           R+++ G  S   A++    V+ H     +E  RNFSG+    +D  +    Q+S  G
Sbjct: 681 RNIQQGSSSTPLATQDFFAVRPHSTNAAYELMRNFSGVPRRLFDGNITTAGQNSNMG 737


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,833,584
Number of Sequences: 53049
Number of extensions: 345299
Number of successful extensions: 933
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1396986582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)