Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26k03
         (438 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr...    31   0.37 
Z79757-5|CAB02126.2|  551|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AY491013-1|AAS18682.1|  464|Caenorhabditis elegans nose resistan...    28   2.6  
AY491012-1|AAS18681.1|  573|Caenorhabditis elegans nose resistan...    28   2.6  
Z70034-10|CAI79119.2|  560|Caenorhabditis elegans Hypothetical p...    28   3.4  
Z70034-3|CAA93860.2|  620|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z70034-2|CAA93854.3|  623|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical ...    27   7.9  

>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical
           protein C52E12.4 protein.
          Length = 1487

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +2

Query: 56  WFQQYTGEVARIFKTSLCLVSLDFGRA-VPRDAPVF 160
           W+ + T     +F++++C+V LD GR+ +P D PVF
Sbjct: 358 WYYEDTVP-EELFQSNVCVVDLDTGRSELPEDVPVF 392


>Z79757-5|CAB02126.2|  551|Caenorhabditis elegans Hypothetical
           protein F55B12.5 protein.
          Length = 551

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 54  YGSSSIPEKLRESSKQVCASCRWTSDAQFPETP 152
           Y  SS+P+ L++ SK VC+ C     A   E P
Sbjct: 354 YTPSSLPKILQKLSKAVCSKCYVEVSANLTEQP 386


>AY491013-1|AAS18682.1|  464|Caenorhabditis elegans nose resistant
           to fluoxetine protein.
          Length = 464

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 54  YGSSSIPEKLRESSKQVCASCRWTSDAQFPETP 152
           Y  SS+P+ L++ SK VC+ C     A   E P
Sbjct: 242 YTPSSLPKILQKLSKAVCSKCYVEVSANLTEQP 274


>AY491012-1|AAS18681.1|  573|Caenorhabditis elegans nose resistant
           to fluoxetine protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 54  YGSSSIPEKLRESSKQVCASCRWTSDAQFPETP 152
           Y  SS+P+ L++ SK VC+ C     A   E P
Sbjct: 351 YTPSSLPKILQKLSKAVCSKCYVEVSANLTEQP 383


>Z70034-10|CAI79119.2|  560|Caenorhabditis elegans Hypothetical
           protein C18E9.3c protein.
          Length = 560

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +3

Query: 6   RSPEPLDCAYKHILESYGSSSIPEKLRESSKQVCASCRWTSDAQFPETPP 155
           +SPE L    ++++E YG     E + + ++ V    ++T D    + PP
Sbjct: 163 KSPETLKMTQQNMVEHYGEELSRELMEQPAEIVPPERQYTPDFTLQQPPP 212


>Z70034-3|CAA93860.2|  620|Caenorhabditis elegans Hypothetical
           protein C18E9.3b protein.
          Length = 620

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +3

Query: 6   RSPEPLDCAYKHILESYGSSSIPEKLRESSKQVCASCRWTSDAQFPETPP 155
           +SPE L    ++++E YG     E + + ++ V    ++T D    + PP
Sbjct: 223 KSPETLKMTQQNMVEHYGEELSRELMEQPAEIVPPERQYTPDFTLQQPPP 272


>Z70034-2|CAA93854.3|  623|Caenorhabditis elegans Hypothetical
           protein C18E9.3a protein.
          Length = 623

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +3

Query: 6   RSPEPLDCAYKHILESYGSSSIPEKLRESSKQVCASCRWTSDAQFPETPP 155
           +SPE L    ++++E YG     E + + ++ V    ++T D    + PP
Sbjct: 226 KSPETLKMTQQNMVEHYGEELSRELMEQPAEIVPPERQYTPDFTLQQPPP 275


>AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.10 protein.
          Length = 976

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = -2

Query: 374 RYNVIDVIYGASVGGRCSVSLVLRLNGAAYFDRADNSELDSAI*TSYGLSLAPSCSRTVR 195
           RY +  ++  A    RC V   L  N     D    S+ D+    SYG+   P C   +R
Sbjct: 742 RYTIQPILSDAEQPIRCEVCHHLYNNIEMLCDHWQGSDTDTD--HSYGIVTCPICESRIR 799

Query: 194 G 192
           G
Sbjct: 800 G 800


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,677,366
Number of Sequences: 27780
Number of extensions: 179117
Number of successful extensions: 422
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)