Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26k03
         (438 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.28 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.28 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   7.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.9  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 25.4 bits (53), Expect = 0.28
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 172 LRSLEDGGVSGNCASEVQRHEAQTCFEDSRNFSGILLEPYDSR 44
           L S++          EV   + Q    DSRN +  L EPY+ R
Sbjct: 856 LESIQQKAKRSKSLQEVSSDKLQESSTDSRNPALALAEPYNQR 898


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 25.4 bits (53), Expect = 0.28
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 172  LRSLEDGGVSGNCASEVQRHEAQTCFEDSRNFSGILLEPYDSR 44
            L S++          EV   + Q    DSRN +  L EPY+ R
Sbjct: 894  LESIQQKAKRSKSLQEVSSDKLQESSTDSRNPALALAEPYNQR 936


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 138 TARPKSNDTRHRLVLKILATSPVYCWNH 55
           T  P++ D+RH    K   ++  Y W H
Sbjct: 165 TFEPRATDSRHYDRYKEEESNENYNWEH 192


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
          protein.
          Length = 405

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 72 VYCWNHTI 49
          VY WNHT+
Sbjct: 12 VYQWNHTV 19


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +3

Query: 66  SIPEKLRESSKQVCASCRWTSDAQFPE 146
           +I  +L+E+   +CA C       +P+
Sbjct: 206 AINRRLKETYSNMCALCEKPEVCDYPD 232


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +3

Query: 66  SIPEKLRESSKQVCASCRWTSDAQFPE 146
           +I  +L+E+   +CA C       +P+
Sbjct: 206 AINRRLKETYSNMCALCEKPEVCDYPD 232


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +3

Query: 66  SIPEKLRESSKQVCASCRWTSDAQFPE 146
           +I  +L+E+   +CA C       +P+
Sbjct: 206 AINRRLKETYSNMCALCEKPEVCDYPD 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,776
Number of Sequences: 438
Number of extensions: 2178
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)