Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26k02
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.6  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   8.7  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +3

Query: 462 RICYDSGWKILQSVRQRKERGCSNI 536
           ++ Y   W++  ++  R E  CS I
Sbjct: 97  KVTYSGLWRVCVAISSRMEYECSRI 121


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 217 TITTPETMVVSRSDDAETEATLDVDTVTEGPVQPIKLTKMDVKSVIS 357
           TI TP T V+S S       +L   + +   +   K    DVK+ I+
Sbjct: 838 TINTPTTSVISMSGTTVPITSLPASSTSINSITVEKDVINDVKTQIT 884


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 215  PQLRPQRPWWCP 250
            PQL+PQ+P+  P
Sbjct: 1124 PQLKPQKPFTSP 1135


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 653 KLNVALVKASTFTDTVKWFESR 588
           +LN+AL  + T T    WF++R
Sbjct: 38  RLNLALSLSLTETQVKIWFQNR 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,557
Number of Sequences: 438
Number of extensions: 4393
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)