Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26k01
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0549 + 18696903-18698330                                         33   0.17 
11_06_0682 - 26253319-26253575,26254009-26254114                       32   0.39 
07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,380...    31   0.89 
05_05_0392 + 24629528-24630442                                         30   1.6  
02_05_0584 - 30135768-30135790,30136104-30136866                       30   1.6  
05_01_0407 + 3208818-3210218                                           29   2.7  
11_04_0137 + 13909204-13909315,13910002-13910999,13911058-139112...    29   3.6  
01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,502...    28   8.3  

>10_08_0549 + 18696903-18698330
          Length = 475

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 20/47 (42%), Positives = 25/47 (53%)
 Frame = +3

Query: 153 GAVGTADRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIP 293
           GAV    RG ++ A +V  V  R   +AR PPRP  A  HRE   +P
Sbjct: 180 GAVAEMARGGAAAAPSVAPVWGREMLEARSPPRPAFA--HREYDEVP 224


>11_06_0682 - 26253319-26253575,26254009-26254114
          Length = 120

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 220 RTPTRPTACAVDETPRSAVPTAPASCCPMGSFVSRKIKH 104
           RT + PT      TP S+ PT  A+  P GS V R + H
Sbjct: 48  RTQSMPTTPTTPVTPSSSSPTTTATTTPRGSNVWRSVFH 86


>07_01_0511 +
           3806475-3806876,3807914-3808039,3808120-3808193,
           3808278-3808347,3808431-3808486,3808578-3808649,
           3808678-3808811,3808967-3809030,3809111-3809240,
           3809326-3809541,3809629-3809750,3810527-3810701,
           3810788-3810878,3811040-3811197,3811330-3811518,
           3813257-3813340,3813362-3813536,3815300-3815955,
           3816226-3816648,3816752-3816790
          Length = 1151

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 177 GVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIPIV-NERKQTT 320
           G + ++ A G  G  H  D+  PP    +++HR T + P   +ER   T
Sbjct: 800 GAAGSSTATGAAGSNHTADSTVPPSLLSSEHHRSTESDPSAEHERHDIT 848


>05_05_0392 + 24629528-24630442
          Length = 304

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +3

Query: 150 AGAVGTA--DRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIPIVNERKQTTH 323
           +G +G A  DRG ++     GR G   A  +  PP PR     R TR  P    ++    
Sbjct: 144 SGELGRARRDRGPAAAVHGAGRPGGGRASPSPPPP-PRREPGERPTRRSPSPATKRPPDQ 202

Query: 324 RHT 332
           R T
Sbjct: 203 RRT 205


>02_05_0584 - 30135768-30135790,30136104-30136866
          Length = 261

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 223 CRTPTRPTACAVDETPRSAVPTAPASCC 140
           C TP        D    +AVPT PA+CC
Sbjct: 172 CMTPLMSVMPCADYLTNTAVPTPPATCC 199


>05_01_0407 + 3208818-3210218
          Length = 466

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +3

Query: 156 AVGTADRGVSSTAQAVGRVGVRHAGDARRPPRPRH--AQNHRETRTIP 293
           AVG   RGV   A  V  V  R    ARRPP PR   A  H E   +P
Sbjct: 180 AVGEFARGVPG-APTVKPVWARELLSARRPPLPRDVAAPRHPEYEAVP 226


>11_04_0137 +
           13909204-13909315,13910002-13910999,13911058-13911267,
           13911522-13912056,13912154-13912461
          Length = 720

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 210 VGVRHAGDARRPPRPRHAQNHRETRTIPIVNERKQTTHRHTR 335
           +G+R AG   RPPRPR   +  E     I + R+++ HR  R
Sbjct: 1   MGIRQAGLKPRPPRPRCLFDLFEDH---IASRRRESPHRRLR 39


>01_01_0660 +
           5029070-5029177,5029303-5029398,5029494-5029556,
           5029836-5029913,5030446-5030614,5030797-5031180,
           5031959-5032042,5032143-5032288,5032810-5033070,
           5033147-5033328,5033421-5033586,5033650-5033703,
           5034702-5034965,5035088-5035303,5035388-5035540,
           5035630-5035827
          Length = 873

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = +3

Query: 138 GQHDAGAVGTADRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIPIVNERKQ 314
           G H+      + +G   T +A G+V  R A   +    P   +++ E RT  + + +K+
Sbjct: 110 GHHNVSDESKSHKGSDQTVRASGKVRKREATGQKEKEAPHAHRSYHERRTSGLSSFKKR 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,844,544
Number of Sequences: 37544
Number of extensions: 247222
Number of successful extensions: 779
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)