Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26j22
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    26   3.6  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    25   4.7  
SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ...    25   6.3  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   6.3  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    25   6.3  

>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 401 PFKVLEGTNQFLSTCIIAGRWKPGG 327
           P+K+L+ T + +S  +  G  KPGG
Sbjct: 169 PYKILDLTAECISLMLTLGNVKPGG 193


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 361 VERNWFVPSNTLKGTPITRVYSDK 432
           +E++ F+P + LKGT +T +  +K
Sbjct: 447 IEKSKFIPISGLKGTNLTSISQEK 470


>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
           Orc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -3

Query: 199 LHATHALCVPPTLAHFTSYTLQLDLNL 119
           L AT  LC P   AH     L  DLNL
Sbjct: 42  LKATEELCRPYMAAHLACELLSNDLNL 68


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +1

Query: 313  TSSQQPPGFHLPAIMHVERNWFVPSNTLKGTPITRVYSDKTGTEAVTYGLEADGASVP 486
            T  ++ P F +P     E   +  S  LKG   +  Y+  T TEA     E   +S+P
Sbjct: 965  TILEEDPPF-VPKPFSPEDTVYFDSRGLKGFDFSEYYNQPTVTEAQKLEEERPASSIP 1021


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 385 SNTLKGTPITRVYSDKTGTEAVT 453
           S+T+  TP++ +YS  +GT  V+
Sbjct: 131 SSTVSSTPVSTIYSGTSGTTFVS 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,094,134
Number of Sequences: 5004
Number of extensions: 43294
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)