Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26j22
         (495 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69663-2|CAA93509.2|  819|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z29443-9|CAA82575.2|  292|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AB019521-1|BAC66463.1|  292|Caenorhabditis elegans T-box transcr...    29   1.9  
Z81513-10|CAB04183.1|  247|Caenorhabditis elegans Hypothetical p...    28   3.2  
Z54327-9|CAA91122.2|  839|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U80029-6|AAB37586.1|  199|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U80027-14|AAC48127.1|  199|Caenorhabditis elegans Hypothetical p...    27   5.7  
U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z77663-14|CAB01214.2|  568|Caenorhabditis elegans Hypothetical p...    27   9.9  
AJ581300-1|CAE46113.1|  568|Caenorhabditis elegans flavin monoox...    27   9.9  

>Z69663-2|CAA93509.2|  819|Caenorhabditis elegans Hypothetical
           protein K02B9.2 protein.
          Length = 819

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = -1

Query: 414 GDGRTLQSVGGHEPVPLHVHNRRQVEAWRLL*RCQNKTSR---YREPYSHRHDHSNRLTA 244
           GDGRT  +    EPV     NR + E+   +   Q++T     +R  Y+++ +  NR + 
Sbjct: 207 GDGRTSNNTSLQEPVIQDTRNRNRSESSSTM-SSQSRTEHAPIFRLQYNYQREADNRSSR 265

Query: 243 EVSVLG 226
            V + G
Sbjct: 266 LVQIQG 271


>Z29443-9|CAA82575.2|  292|Caenorhabditis elegans Hypothetical
           protein T07C4.6 protein.
          Length = 292

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = -2

Query: 494 ISNGTDAPSASRPYVTAS---VPVLSLYTRVMGVPFKVLEGTNQFLST 360
           ISN +++ +AS  Y+ +    +PVL++Y      PF V + +NQ ++T
Sbjct: 112 ISNYSESNNASMIYLNSMHKYIPVLTIYESPSESPFCVPQSSNQIVAT 159


>AB019521-1|BAC66463.1|  292|Caenorhabditis elegans T-box
           transcription factor TBX-9 protein.
          Length = 292

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = -2

Query: 494 ISNGTDAPSASRPYVTAS---VPVLSLYTRVMGVPFKVLEGTNQFLST 360
           ISN +++ +AS  Y+ +    +PVL++Y      PF V + +NQ ++T
Sbjct: 112 ISNYSESNNASMIYLNSMHKYIPVLTIYESPSESPFCVPQSSNQIVAT 159


>Z81513-10|CAB04183.1|  247|Caenorhabditis elegans Hypothetical
           protein F26D2.13 protein.
          Length = 247

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 275 IDMITVIV*PPKSVSLACVASFVRAATRYTCTVCPSYTCTL 153
           +D +T     P   ++  + +FV    + TC+ CPS T TL
Sbjct: 156 VDAVTDCANDPSICNMVGMQNFVNQNCQRTCSRCPSSTSTL 196


>Z54327-9|CAA91122.2|  839|Caenorhabditis elegans Hypothetical
           protein C26D10.4 protein.
          Length = 839

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 14  GFXGYVSGLFINKSVINISEVMCCSVMDGNWIV 112
           G  GYV   +++ SV N S++   S   G WIV
Sbjct: 105 GGNGYVFDTYLSNSVKNCSKIAANSTHTGVWIV 137


>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical
           protein W02C12.1 protein.
          Length = 1372

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = -2

Query: 362 TCIIAGRWKPGGCCDDVRTRHPATVSHTPIDMITVIV*PPKSVSLACVASFVRAATR 192
           TC   G+WKP         R+P    H P   + VIV      S AC  S   A T+
Sbjct: 750 TCAADGKWKPNK-SPSTMFRYPQCTKHVPATKV-VIVRIIYGSSPACTESSKEAFTQ 804


>U80029-6|AAB37586.1|  199|Caenorhabditis elegans Hypothetical
           protein T20D4.11 protein.
          Length = 199

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 206 SQMKRRKPRTLTSAVKRLL*SCLWEYGSR*RDVLF 310
           S+++RR+ R       + +  C+WE+G   + VLF
Sbjct: 28  SELERRRIRDCPEVTFKRMAGCVWEFGGFLKKVLF 62


>U80027-14|AAC48127.1|  199|Caenorhabditis elegans Hypothetical
           protein T28A11.19 protein.
          Length = 199

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 206 SQMKRRKPRTLTSAVKRLL*SCLWEYGSR*RDVLF 310
           S+++RR+ R       + +  C+WE+G   + VLF
Sbjct: 28  SELERRRIRNCPEVTFKRMTGCVWEFGRFLKKVLF 62


>U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical
           protein F31E3.4 protein.
          Length = 1131

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 236 VSLACVASFVRAAT-RYTCTVCPSYTCTLHFLYTS 135
           V +A   S +R+   R+ CT     TC LHFL+T+
Sbjct: 505 VQVAYSLSPIRSIVLRHICTEDSCITCELHFLFTA 539


>Z77663-14|CAB01214.2|  568|Caenorhabditis elegans Hypothetical
           protein F53F4.5 protein.
          Length = 568

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = +3

Query: 276 GSMAHGSGMSCSDIVTAASRLPPACDYARGEELVRALQHFEGYAHHPGVQRQDR 437
           G++   + ++ S  + A S  PP  ++A      + +++ + YA H G+  + R
Sbjct: 50  GTVMESTVVNTSKEMMAYSDFPPPAEFANFMHHTKVIEYIKSYAEHFGLMDKIR 103


>AJ581300-1|CAE46113.1|  568|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 568

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = +3

Query: 276 GSMAHGSGMSCSDIVTAASRLPPACDYARGEELVRALQHFEGYAHHPGVQRQDR 437
           G++   + ++ S  + A S  PP  ++A      + +++ + YA H G+  + R
Sbjct: 50  GTVMESTVVNTSKEMMAYSDFPPPAEFANFMHHTKVIEYIKSYAEHFGLMDKIR 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,214,310
Number of Sequences: 27780
Number of extensions: 277462
Number of successful extensions: 805
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)