Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26j10
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    29   0.69 
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    28   1.2  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   4.9  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    25   8.5  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   8.5  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   8.5  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -1

Query: 561 PISTGCIPPFRGCPTDSMARPNSCLQLIC*QKFMQ-QKWFGFDETQFEILAAF 406
           P+S   IPP     TD ++  N    LIC    +Q    F FD  Q E L +F
Sbjct: 268 PLSPSIIPPLVSAITDRLSFDNIKPALICVGHLLQFCSSFEFDHEQLEKLESF 320


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = +1

Query: 205 WCVYILR----QDNGKLYTGITSNLNRRIKQHSNK 297
           +C Y+L+    Q +G +Y G T +  RR++QH+ +
Sbjct: 7   YCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGE 41


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 323  ALRKHLAPCLFECCFMRLLRLLVMPV 246
            +L +H  PC+ + CF + LR  ++ +
Sbjct: 1298 SLMQHFLPCILDSCFSKNLRYSMLGI 1323


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 320 LRKHLAPCLFECCFMRLLRLLVMPVY 243
           LRK   PC  + C  R+ +  + P+Y
Sbjct: 179 LRKKTVPCPVQHCRKRITKKFIFPLY 204


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 509 WHVQIHVYNLFANRNLCNKSGL 444
           WHV  H+   F N  LC K+ +
Sbjct: 263 WHVPCHMIYKFWNVKLCQKTSI 284


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +2

Query: 425 NCVSSKPNHFCCINF 469
           +C+  +P+ FCC++F
Sbjct: 168 DCIKKEPSLFCCLDF 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,247
Number of Sequences: 5004
Number of extensions: 42376
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)