Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26i22
(456 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 29 0.34
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 28 0.59
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 27 1.8
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|... 26 3.1
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 4.2
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 25 4.2
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.5
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 5.5
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual 25 7.3
SPBC409.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.3
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 24 9.6
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 24 9.6
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c... 24 9.6
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 29.1 bits (62), Expect = 0.34
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -2
Query: 197 ALSCCSKRVSTSTGSLPEPMPSSSHAVSLREKGMGQEWIRISDDT 63
A+ C+++V+ S+G L + + HA+ L E+ EW D+T
Sbjct: 404 AIELCARKVAASSGDLRKALDICRHAIELAER----EWKAQHDNT 444
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 28.3 bits (60), Expect = 0.59
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 251 SASKNASRLARV-GSSSLPALSCCSKRVSTSTGSLPEPMPSSSHAVSL 111
S N+S L + SSS P++S S+ + +P + SS H + L
Sbjct: 111 STPSNSSSLPSIPSSSSTPSISSIPHTTSSVSNDIPSVLGSSDHPIDL 158
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 26.6 bits (56), Expect = 1.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 403 GPRCAFCHESGHDVAAC 453
GPRC C E+GH C
Sbjct: 16 GPRCYNCGENGHQAREC 32
>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 539
Score = 25.8 bits (54), Expect = 3.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 373 VETAPSYPLPLPXEQPKRRGRKPAHATQR 287
++TA S P+P E+P RKP QR
Sbjct: 31 LDTAASEVSPIPQERPTTSLRKPTPRVQR 59
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 4.2
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Frame = -2
Query: 398 TAAMSAVSR*DGXXXXXXXXX*ATETAWPEAGTRDPEEEGGGIISCLRLSASKNASRLAR 219
T + S+VS +T T + + S S+S ++S +
Sbjct: 126 TVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 185
Query: 218 VGSSSLPALSCCSKRVSTSTGSLP-EPMPSSSHAVS 114
SSS + S S S+S+ S+P SSSH+ S
Sbjct: 186 SSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSS 221
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 4.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -2
Query: 257 RLSASKNASRLARVGSSSLPALSCCSKRVSTSTGSLPEPMPSSSHAVSLR 108
+L +K S++ GS + S +K+ T S MP S+H +S R
Sbjct: 61 QLKPAKFPSKMLPPGSLASVKSSSLAKKARPFTASSNPRMPKSAHPISSR 110
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 5.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 233 SRLARVGSSSLPALSCCSKRVSTSTGSLPEPMPSSSHAVS 114
S ++ SSS +L+ S TS+ S SSSHA+S
Sbjct: 85 SSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALS 124
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 25.0 bits (52), Expect = 5.5
Identities = 21/86 (24%), Positives = 35/86 (40%)
Frame = -2
Query: 323 TAWPEAGTRDPEEEGGGIISCLRLSASKNASRLARVGSSSLPALSCCSKRVSTSTGSLPE 144
T+ PE + E II + + N S A + + + + S R + + +P
Sbjct: 33 TSNPELSHIEKESNASSIIISQQPLSPSNISSAAPLDETHIATKASASLRNNNVSPHIPS 92
Query: 143 PMPSSSHAVSLREKGMGQEWIRISDD 66
P SS + S +K M E S+D
Sbjct: 93 PSSFSSSSSSDLDKSMLDEKHPDSED 118
>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 24.6 bits (51), Expect = 7.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 215 GSSSLPALSCCSKRVSTSTGSLPEPMPS 132
G+ + A SC +ST G +PE +PS
Sbjct: 280 GTVLVEAASCGLYVISTKVGGVPEVLPS 307
>SPBC409.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 385 AQSVVETAPSYPLPLPXEQPKRRGRKP 305
+ +++ETA ++ LP E+ + RKP
Sbjct: 70 SHAIIETARNFALPNTAEEEENMDRKP 96
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 24.2 bits (50), Expect = 9.6
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 254 LSASKNASRLARVGSSSLPALSCCSKRVSTSTGSLPEPMPSSSHAVSLREKGMGQEWIRI 75
LS S+L G+ L ++ GSLP P + + K GQ+ IRI
Sbjct: 252 LSVEYAGSKLFSTGADDCICLHPTPSSIADDLGSLPHP-------IFRKTKHCGQQNIRI 304
Query: 74 SDDTQL 57
D ++
Sbjct: 305 RSDNKI 310
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 24.2 bits (50), Expect = 9.6
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = -3
Query: 412 TVGLPPLP*AQSVVETAPSYPLPLPXEQPKRRGRKPAHATQRRR 281
T +P P AQ V PSY + R +TQR R
Sbjct: 180 TSAIPAQPPAQPVNNVLPSYVRSNSRSSARSTARSAPRSTQRSR 223
>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 334
Score = 24.2 bits (50), Expect = 9.6
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +1
Query: 142 GSGR-LPVEVLTRFEQQDNAGRDELPTLANLLAFLEAESRRHEIMPPPSSSGSRVPASGH 318
G GR LP+ T ++ + A + + F E S + +PPP+S S +G
Sbjct: 271 GRGRILPIPSATSYDLIE-ASLGSFSKVLDTYQFAEVVSCLEKTLPPPASPNSEPQVTGG 329
Query: 319 AVSV 330
S+
Sbjct: 330 CSSM 333
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,625
Number of Sequences: 5004
Number of extensions: 34479
Number of successful extensions: 168
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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