Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26i21
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0421 - 3321590-3323692 32 0.42
06_03_1035 + 27050104-27050422,27051975-27052519 29 2.9
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391... 29 2.9
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 29 2.9
12_02_0189 + 15165485-15168694 28 5.1
11_06_0338 + 22479804-22480651,22480764-22482954 28 5.1
08_02_0657 - 19749835-19751942,19753123-19753561 28 5.1
01_07_0231 + 42176598-42178117,42178232-42179753 28 5.1
11_01_0788 + 6599962-6602700 28 6.8
04_04_1556 - 34380013-34380021,34381175-34381271,34381570-343816... 28 6.8
05_01_0603 - 5399295-5399748,5403745-5403909,5404007-5404069,540... 27 8.9
>12_01_0421 - 3321590-3323692
Length = 700
Score = 31.9 bits (69), Expect = 0.42
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -1
Query: 280 PSEVALGVGVLKTEEPHLAEA-DRLHNLIEELLPGGRLLDRELEFRVHRRHADVH*FRHV 104
P+ V +G GV ++ P+ E DRL ++ + ++ G + + F V RR+A R +
Sbjct: 242 PASVDVGAGVGESAPPYPPETVDRLRSMADAMVTAGYVTECTQMFLVARRNASDASLRAL 301
Query: 103 GY 98
GY
Sbjct: 302 GY 303
>06_03_1035 + 27050104-27050422,27051975-27052519
Length = 287
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 228 SRRPIVFTT*SKSCFPVVVCWIANSSSASIVVTRTFIDFGMLAMD 94
SRRP++ C+ + W A + A+ V+ +D +L MD
Sbjct: 95 SRRPVILLLDRGECYFALKAWNAQQAGAAAVLIADNVDEQLLTMD 139
>04_04_1120 +
31037811-31038813,31038903-31038991,31039094-31039163,
31039270-31039353,31039452-31039528,31039631-31039712,
31039847-31039929,31040270-31040333,31040435-31040566,
31040674-31040777,31040901-31040996,31041144-31041251
Length = 663
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 228 SRRPIVFTT*SKSCFPVVVCWIANSSSASIVVTRTFIDFGMLAMD 94
SRRP+V C+ + W A + A+ V+ +D +L MD
Sbjct: 91 SRRPVVLLVDRGGCYFALKTWHAQLAGAAAVLVADGVDEPLLTMD 135
>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 479 LASYAVQARHGEHNPALHGPGFLAN 553
+ SYA +++H E +++GPG+L N
Sbjct: 1370 MTSYACRSKHSECVDSINGPGYLCN 1394
>12_02_0189 + 15165485-15168694
Length = 1069
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 218 GLREVWFFG--LQYTDSKGDLTWIKLYKKVMQQDVKKEN 328
G+++ W G L+Y +SK +L+W K+ K+VM EN
Sbjct: 908 GIKD-WLNGCNLKYYESKLNLSWRKVLKEVMNNKESDEN 945
>11_06_0338 + 22479804-22480651,22480764-22482954
Length = 1012
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 253 VLKTEEPHLAEADRLHNLIEELLPGGRLLD 164
+++ +E L E + LH I +LL GGR+ D
Sbjct: 6 IMEKQEEALKEWEPLHESISKLLKGGRITD 35
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 449 IYCPPETSVLLASYAVQARHGEHNPALHGPGFLANDPFTSSKSDR 583
+Y PP T L + A+ A G H ++GP ++ P S + R
Sbjct: 254 LYGPPGTGKTLLARAIAAESGAHFVVVNGPEIMSGMPGESEANLR 298
>01_07_0231 + 42176598-42178117,42178232-42179753
Length = 1013
Score = 28.3 bits (60), Expect = 5.1
Identities = 40/164 (24%), Positives = 63/164 (38%), Gaps = 5/164 (3%)
Frame = +2
Query: 134 TTMDAELEFAIQQTTTGKQLFDQVVKTIG----LREVWFFG-LQYTDSKGDLTWIKLYKK 298
TT + ELE + +T +L + T G LR F G SK ++
Sbjct: 674 TTPEKELESIVSSSTKSSKLATGKMVTFGPGNSLRSEDFVGGADALLSKATEIGRGVFGT 733
Query: 299 VMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVL 478
V + V + + K A + D+ +E+ + L + N + Y P+ +L
Sbjct: 734 VYRASVGEGRVVAIKKLATASIVESRDDFDREVRI-LGKARHPNLLPLKGYYWTPQLQLL 792
Query: 479 LASYAVQARHGEHNPALHGPGFLANDPFTSSKSDRPTQDVPRGM 610
+ YA HG LHG G A P T ++ R RG+
Sbjct: 793 ITDYAP---HGSLEARLHGNGDGAFPPLTWAERFRIVAGTARGL 833
>11_01_0788 + 6599962-6602700
Length = 912
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 164 IQQTTTGKQLFDQVVKTIGLREVWFFGLQYTD 259
++ K L +Q+ K + LR VW + YTD
Sbjct: 685 LETMQASKDLAEQLSKLLKLRRVWIDNISYTD 716
>04_04_1556 -
34380013-34380021,34381175-34381271,34381570-34381631,
34382072-34382163,34382387-34382420,34383434-34383496,
34383951-34383966,34385694-34385783,34386253-34386596
Length = 268
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 542 IPARAERDCVLRVWLGPRTKPATPRSPEG 456
+P R RD LR WL P + + P+G
Sbjct: 132 LPNRTVRDVALRCWLRPSSSKDRRKKPDG 160
>05_01_0603 -
5399295-5399748,5403745-5403909,5404007-5404069,
5404320-5404720,5404861-5404930,5405151-5405266
Length = 422
Score = 27.5 bits (58), Expect = 8.9
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Frame = +2
Query: 242 GLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITL--KLFY 415
GL + DSK L W + KV ++D + P + ++ + A L + L +L
Sbjct: 247 GLLHYDSKARLRWCRGVAKVREEDPGAQ-PYDNRSFLQYVEQGTAPALAGTLRLYRRLLE 305
Query: 416 LQVKNAILSDEIYCPPETSVLLASYAVQARHGEHNPALHGPGFLANDPFTSSKSDRPTQD 595
L +K L+ + + +V + + + Q G L G L+ + F S + + D
Sbjct: 306 LGIKPVFLT--VRTENQRAVTIRNLSQQGYSGWEKLVLQPTGGLSIEAFKSGERHKLVSD 363
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,145,053
Number of Sequences: 37544
Number of extensions: 354601
Number of successful extensions: 962
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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