Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26i21
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.4  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   4.1  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   7.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.6  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.6  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 309 KTSRKRIHCSSNSEPNSILRMSPMSSYRRS 398
           +TSRKR  CS   E  S    +    YR +
Sbjct: 266 RTSRKRYSCSREREQKSYKNENSYRKYRET 295


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 115 FRHVGYGSPV*TRISPN 65
           FRH+G  +P    ISPN
Sbjct: 149 FRHIGPSTPFPRFISPN 165


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 306 NKTSRKRIHCSSNSEPNSILRMS 374
           N+  +    CS  S+PN+++++S
Sbjct: 95  NEADQLLAECSPISDPNALIKIS 117


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -1

Query: 181 GGRLLDRELEFRVHRRHADVH 119
           G R  +  L  R+HR    VH
Sbjct: 295 GSRFDEERLTLRIHRGRGSVH 315


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +2

Query: 494 VQARHGEHNPALHGPGFLANDPFTSSK 574
           V   HG+H P      F  +DP   SK
Sbjct: 337 VPGDHGDHAPKQTEVRFKVHDPKAHSK 363


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +2

Query: 494 VQARHGEHNPALHGPGFLANDPFTSSK 574
           V   HG+H P      F  +DP   SK
Sbjct: 337 VPGDHGDHAPKQTEVRFKVHDPKAHSK 363


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 309 KTSRKRIHCSSNSEPNSILRMSPMSSYRRS 398
           +TSRKR   S   E NS         YR +
Sbjct: 33  RTSRKRYSRSREREQNSYKNEKEYRKYRET 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,199
Number of Sequences: 438
Number of extensions: 3768
Number of successful extensions: 28
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)