Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26i17
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0617 - 4483517-4483978,4484093-4484490,4484814-4484898,448...    36   0.036
11_06_0328 - 22395911-22396480                                         33   0.19 
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181...    29   2.4  
01_06_1112 + 34606171-34606266,34607170-34607231,34607932-346080...    29   2.4  
08_02_1264 + 25706009-25706148,25706613-25706716,25707108-257072...    29   4.1  

>06_01_0617 -
           4483517-4483978,4484093-4484490,4484814-4484898,
           4485002-4485838
          Length = 593

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +1

Query: 382 TQGTLQTLQIKPEPNTLVNTQGQSCSDESCGSGDESPKRKYREMLTRRPSYRKILN 549
           T GT   L  K +    + ++ + CS  SCGSG E      R  +TR+  ++  LN
Sbjct: 174 THGTKTPLNPKTQRRNAIESKDK-CSKSSCGSGSEKSNETLRIAVTRKYGFQNFLN 228


>11_06_0328 - 22395911-22396480
          Length = 189

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 364 SSVIHTTQGTLQTLQIKPEPNTLVNTQGQSCSDESCGSGDESPKRKYREML 516
           +  + TT G  +T  +  E      T G  CS E+CG GDE  +   ++M+
Sbjct: 25  AGAVITTTGESETTTVA-EAAAAETTTGGKCSGEACGGGDEQKQPSAKKMM 74


>11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,
            1816199-1816309,1816934-1817074,1817153-1817323,
            1817421-1817625,1817714-1817886,1817997-1818079,
            1818487-1818626,1818806-1818891,1818957-1819142,
            1819172-1819365,1820387-1820736,1821153-1821235
          Length = 1187

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 445  GQSCSDESCGSGDESPKRKYREMLTRRPSYRK 540
            G+S  D+SCG GD++  +K R+ L  R + RK
Sbjct: 1042 GESSDDDSCG-GDKAKPKKGRKPLGNREAVRK 1072


>01_06_1112 +
           34606171-34606266,34607170-34607231,34607932-34608019,
           34608104-34608165,34608246-34608342,34608499-34608930,
           34609042-34610061,34610151-34610282,34610354-34610470,
           34610982-34611062,34611321-34611447,34611547-34611592,
           34611663-34611708
          Length = 801

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +1

Query: 223 QLTLPSQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQ 399
           Q   P  A SAQ+ +       SV QTA   +SVQ  + +++ V+KP      T  T Q
Sbjct: 321 QSVAPPMAHSAQLYASQSNINSSVSQTAPTRESVQHGRVHMVSVAKPPVSTQPTTSTNQ 379


>08_02_1264 +
           25706009-25706148,25706613-25706716,25707108-25707284,
           25707775-25709708,25709781-25709867,25710058-25710091,
           25710293-25710381,25710522-25710674
          Length = 905

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 418 EPNTLVNTQGQSCSDESCGSGDESP 492
           EP     TQG  C  E+C SG+ SP
Sbjct: 600 EPANENATQGTKCVPEACSSGENSP 624


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,718,290
Number of Sequences: 37544
Number of extensions: 326984
Number of successful extensions: 867
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)