Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26i16
         (506 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.              30   4.0  
AJ619019-1|CAF02096.1|   99|Homo sapiens transforming growth fac...    30   5.3  
Z34281-1|CAA84035.1|   62|Homo sapiens mucin protein.                  29   9.3  

>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
          Length = 1349

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -1

Query: 506 SLPQRSINSSPTSHCCLIPHMSKSSLPTVSVFMDSSTRVLGSSEPP 369
           S PQ SI+S+PTS     P  S  S PT S    +S     ++ PP
Sbjct: 825 STPQTSISSAPTSSTTSAPTASTISAPTTST---TSFHTTSTTSPP 867


>AJ619019-1|CAF02096.1|   99|Homo sapiens transforming growth factor
           receptor beta 1 protein.
          Length = 99

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 500 PQRSINSSPTSHCCLIPHMSKSSLPTVSVFMDSSTRVLGSSE 375
           P     S  T++CC   H +K  LPT   F   S+  LG  E
Sbjct: 28  PSSKTGSVTTTYCCNQDHCNKIELPTTGPFSVKSSPGLGPVE 69


>Z34281-1|CAA84035.1|   62|Homo sapiens mucin protein.
          Length = 62

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = -1

Query: 506 SLPQRSINSSPTSHCCLIPHMSKSSLPTVSVFMDSSTRVLGSSEP 372
           S PQ S  SSPT+     P  S +S PT S      T +  SS P
Sbjct: 1   STPQTSTTSSPTTSTTSAPTTSTTSAPTTSTTSTPQTSI--SSAP 43



 Score = 29.1 bits (62), Expect = 9.3
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -1

Query: 506 SLPQRSINSSPTSHCCLIPHMSKSSLPTVS 417
           S PQ SI+S+PTS     P  S  S PT S
Sbjct: 33  STPQTSISSAPTSSTTSAPTASTISAPTTS 62


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,662,826
Number of Sequences: 237096
Number of extensions: 1455664
Number of successful extensions: 3988
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3982
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4706589866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)