Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26i09
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.73 
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    28   1.3  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    28   1.3  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.9  
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ...    26   3.9  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   6.8  
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family...    25   6.8  
SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.0  

>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 601 NELNHNLMSVSFEEFIKVLGVFPFGIVQFAQDIEF 497
           N++   ++ VS+     +LG+F FG+  F Q+IEF
Sbjct: 472 NDIIDKVICVSYANNT-ILGLFDFGLCAFTQEIEF 505


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 430 LPARCLQAFWDPFLEVVSFSCALSLVIKTKC 338
           L A C++  WD FL+++  +   S+V+ T C
Sbjct: 124 LGASCMEFIWDNFLQLMFAAYVFSVVLCTFC 154


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +2

Query: 281 YDNFN--VDEIIDNPRLLKAYTFCFNDKGKCTAEGNDFKKWIPESLQTSCGKCSEKQKYL 454
           Y NF   +D I  N     AY+   N    C+   N +K W+  S+   C   ++   YL
Sbjct: 328 YQNFTYTLDLIPCNATSWSAYSLLKN----CSDCANSYKNWLCASVIPRCADINDNSSYL 383

Query: 455 VAK 463
           + K
Sbjct: 384 IYK 386


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 363 SAQLKETTSRNGSQKACRHRAGSALKSRSI*WPSSSTPSRIRCLTNSISCANCTIP 530
           ++ +   TS N      +  + S++ S S    SSSTP      T+S   +N TIP
Sbjct: 61  TSNVASNTSENYPYTGSKSLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIP 116


>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 480 RIRCLTNSISCANCTIPKGNTPRTLINSSK 569
           R RC   SI+  NCT+PK +  R LI  S+
Sbjct: 65  RWRC---SIALPNCTLPKPDVDRILIRLSQ 91


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
 Frame = +2

Query: 356 KGKCTAEGNDFKKWIPESLQTSCGKCSEKQKY-LVAKFVHAIKDKMPDEFD--ILRKLHD 526
           +G+  +  N  ++W+ + LQ S G+  ++  + L+ + + A+ +   DEF+  IL    +
Sbjct: 145 EGQSVSHANVGERWLEKHLQ-SVGRTKQELAHELLRRDMTAVAELCDDEFEEHILPYTGN 203

Query: 527 PKGEYTENLDK 559
            +G Y   L++
Sbjct: 204 SRGLYLHGLNR 214


>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 463 LGH*ILLLFRALPARCLQAFWDPFL-EVVSFSCALSLVIKT 344
           L H ILLL  +L    L   W P L    S+SCA  L++ T
Sbjct: 2   LNH-ILLLVISLVCAALTLSWFPLLFRKQSYSCAKGLIVIT 41


>SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 546 SVYSPLGSCSLRRISNSSGILSLMAWTNLATRYFC 442
           +V+S   S  L+ ISNS+ I      T+L  R FC
Sbjct: 182 NVFSFFQSLFLKEISNSNNISLAKMLTHLNIRAFC 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,703
Number of Sequences: 5004
Number of extensions: 43537
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)