Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26i09
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0073 - 25602268-25603182,25603273-25604190 32 0.32
08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945 31 0.99
07_01_0504 + 3756714-3757054,3757205-3757259,3757403-3757477,375... 30 1.7
08_01_0678 + 5878291-5878461,5879722-5879984,5881658-5881729,588... 29 2.3
12_01_0235 + 1765117-1766770,1766881-1766984 29 3.0
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 29 3.0
09_02_0475 + 9724676-9724936,9725518-9726216,9726273-9726596,972... 28 5.3
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29... 28 5.3
12_01_0042 + 337131-337612,338727-338898,338996-339204,339414-33... 27 9.2
08_01_0285 - 2316678-2317253 27 9.2
03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964... 27 9.2
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267 27 9.2
>02_05_0073 - 25602268-25603182,25603273-25604190
Length = 610
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -2
Query: 153 PGCGGDGDECRDQGTAKHDHGTSHKSTSLGDHSR-HADQRSKSRQGARRPAA 1
PGCGG GDE RD +H S S G R + R +S G R A+
Sbjct: 136 PGCGGGGDEERD--WERHGGAVSRPSPHRGSPQRKRSGSRERSSGGGSRRAS 185
>08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945
Length = 493
Score = 30.7 bits (66), Expect = 0.99
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 459 ATRYFCF-SEHFPHDVCKLSGIHFLKSFPS 373
AT F F ++H+P D CK + + FLKS S
Sbjct: 386 ATDVFMFDTKHYPRDECKRAALFFLKSISS 415
>07_01_0504 +
3756714-3757054,3757205-3757259,3757403-3757477,
3757638-3757729,3757914-3757995,3758138-3758221,
3758326-3758445
Length = 282
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +2
Query: 392 KWIPESLQTSCGKCSEK--QKYLVAKFVHAIK-DKMPDEFDIL 511
KW E+L T+C +C+ + QK + + +K K P EFDIL
Sbjct: 209 KWEWENLVTACSRCNSRKGQKTVEQANMKLLKVPKAPKEFDIL 251
>08_01_0678 +
5878291-5878461,5879722-5879984,5881658-5881729,
5881807-5881878,5882092-5882166,5882443-5882517,
5883623-5883667,5883767-5883831,5883919-5884203,
5884234-5884298,5884435-5884636,5884735-5884905,
5885237-5885355,5886699-5886909,5887007-5887238,
5887325-5887475,5887547-5887945
Length = 890
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 435 LKSRSI*WPSSSTPSRIRCLTNSISCANCTIPKGNTPRTLINSSKLTDIKL*FNSF 602
L+ I P ++ S++ L +S++ NC I T N LTD+ L +N+F
Sbjct: 195 LQGNKIEGPIPASLSKLVKLNSSLTLRNCNISDKLTSVDFSNFKNLTDLNLVWNNF 250
>12_01_0235 + 1765117-1766770,1766881-1766984
Length = 585
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3
Query: 245 RPPLQPERRKRGRTSFLLANCAKTFGLTF 159
+P +P RR RT L+NCA+ FGL F
Sbjct: 317 QPGFRPARRLE-RTGRRLSNCARAFGLPF 344
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -2
Query: 561 NLSRFSVY-SPLGSCSLRRISNSSGILSLMAWTNLATRYFCFSEHFPHDVCKLSG 400
+LSRF ++ S L S RR + G+ + W L+ RY C E VC L+G
Sbjct: 49 SLSRFPLFFSSLLVFSARRERDLVGVSA--CWRGLSRRYKCSPERTVLSVCMLTG 101
>09_02_0475 +
9724676-9724936,9725518-9726216,9726273-9726596,
9726900-9727847
Length = 743
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -2
Query: 561 NLSRFSVYSPLGSCSLRRISNSSGILSLMAWTNLATRYFCFS-EHFPHDVCKLSGIHFLK 385
NLS G CSL+R+ S G LS + +LA+ C S + P + +L + +L
Sbjct: 664 NLSCLESLEMAGCCSLQRLPESFGGLSKLCSLSLAS---CSSLQRLPDYIGELCSLEYLN 720
Query: 384 SFPSAVHFPLSL 349
+ + P SL
Sbjct: 721 ISHAHLELPDSL 732
>05_01_0042 -
290077-290676,291093-291233,291675-291764,292364-292563,
292685-292743,292827-292942
Length = 401
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 389 KKWIPESLQTSCGKCS 436
K WIP+ L TS GKC+
Sbjct: 37 KHWIPQDLATSSGKCA 52
>12_01_0042 +
337131-337612,338727-338898,338996-339204,339414-339572,
339914-340262
Length = 456
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = -3
Query: 566 RGIYQGSRCIPLWDRAVCAGYRIRQASYP*WRGRTWPLDTSAFQST 429
R +Y G +C ++D C Y Y WR + + F +T
Sbjct: 120 RPLYSGLKCSFIFDEVACDKYGRNDTKYQHWRWQPHGCNLPRFNAT 165
>08_01_0285 - 2316678-2317253
Length = 191
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 6 PAAERLACSYCADPRDASDLQVMSTCD 86
P ERL C CA+ D + + V ST D
Sbjct: 98 PDGERLPCLVCANKYDDASMLVASTAD 124
>03_02_0932 +
12495700-12495738,12495859-12496093,12496178-12496423,
12496519-12496572,12497329-12497589,12497750-12497802,
12497893-12498016,12498147-12498401,12498798-12499888,
12500001-12500007,12500316-12500445,12500617-12500731,
12500783-12500853,12501246-12501354,12501550-12501738,
12502519-12502644,12503048-12503563
Length = 1206
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 150 GCGGDGDECRDQGTAKHDHGTSHKSTSLGDHSRHADQRSKSRQGARR 10
G GGD + ++GT G+SH S + D +H+ S RR
Sbjct: 635 GGGGDHEPEEERGTRLAVIGSSHASYDIQDSVQHSSAASVETTTTRR 681
>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
Length = 769
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 113 PWSRHSSPSPPQPGKRTSGR 172
PWS SPSPP P + S R
Sbjct: 58 PWSLSPSPSPPPPPTKPSRR 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,848,934
Number of Sequences: 37544
Number of extensions: 312281
Number of successful extensions: 1306
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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