Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26i08
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    29   0.37 
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    27   1.5  
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    26   3.4  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    26   4.5  
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    25   6.0  

>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +2

Query: 494 GFGFITFGDPASVDKVLAQGTXELDGK 574
           GFGF+TF +P  V++V+++    LDGK
Sbjct: 205 GFGFLTFKNPKCVNEVMSK-EHHLDGK 230



 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 494 GFGFITFGDPASVDKVLAQGTXELDGK 574
           GFGF+T+ + ++V+  ++Q    + GK
Sbjct: 289 GFGFVTYENESAVEATMSQPYITIHGK 315


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 488 KWGFGFITFGDPASVDKVLAQGTXELDG 571
           K G   +TF DPA+ DK+    T ++DG
Sbjct: 696 KQGLLPLTFADPAAYDKISPFDTVDIDG 723


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 157 FNYSILCI*LTDNNSTFFFKLKFITYLSTSVIKIKTN*NKYSTPPMPD 14
           FN +   + L D+NS + F  K I + S     +KTN +     P P+
Sbjct: 211 FNDTFSSLRLLDDNSVYTFSTKNIAWASDKRRFLKTNYSPDDVAPPPN 258


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 442 KLDTLHFFYLLYHTLKVGLWLHHLRRPS*CRQSISARNTRTR 567
           +L T+  F +L+    + L+ HH  RPS  R+      TR R
Sbjct: 159 QLFTIVVFSILFSIFFIALYTHHPIRPSTGRREPDVPYTRVR 200


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 439 VKLDTLHFFYLLYHTLKVGLWLHHLRRP 522
           +K D    + LL+H  KV  W H   RP
Sbjct: 229 IKKDQFDPYMLLFHAFKVPQWKHIRIRP 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,361
Number of Sequences: 5004
Number of extensions: 47977
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)