Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26i08
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0500 + 21470681-21470952,21471049-21471089,21472322-214724... 36 0.031
02_02_0100 - 6783821-6784339,6784815-6784984,6785062-6785164,678... 34 0.093
08_02_0181 + 13923658-13923661,13925518-13925681,13925879-139259... 33 0.12
03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594 33 0.16
07_03_1061 + 23651404-23651625,23651764-23652954 32 0.38
10_08_0338 + 16916429-16916650,16916728-16917900 31 0.50
11_06_0497 + 24337772-24337993,24338042-24338083,24338176-24339357 31 0.66
08_02_1101 - 24308433-24308978,24309195-24309364,24309443-243095... 31 0.66
07_01_0628 - 4691991-4692806,4694291-4694293,4694527-4694637 31 0.66
03_02_0346 - 7666500-7666646,7666744-7666902 29 2.0
01_07_0160 - 41563109-41563468,41563566-41563985,41564082-415642... 29 2.7
05_04_0101 - 18003528-18003655,18003951-18003997,18004046-180040... 28 4.6
01_06_1806 + 40012952-40016836 28 6.1
>06_03_0500 +
21470681-21470952,21471049-21471089,21472322-21472485,
21472577-21472679,21472806-21472975,21473766-21474239
Length = 407
Score = 35.5 bits (78), Expect = 0.031
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDGK 574
GFGF+TF DP+ +DKVL Q +DG+
Sbjct: 133 GFGFVTFSDPSVIDKVL-QDEHTIDGR 158
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQG-TXELDGK 574
GFGF+TF + +V++V+++G +L GK
Sbjct: 222 GFGFVTFENEDAVERVMSEGRMHDLAGK 249
>02_02_0100 -
6783821-6784339,6784815-6784984,6785062-6785164,
6785291-6785454,6786781-6786821,6786933-6787129
Length = 397
Score = 33.9 bits (74), Expect = 0.093
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDGK 574
GFGF+TF DP+ +DKVL + +DG+
Sbjct: 108 GFGFVTFSDPSVIDKVL-EDEHVIDGR 133
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQG-TXELDGK 574
GFGF+TF SV++V+++G +L GK
Sbjct: 197 GFGFVTFESEDSVERVISEGRMRDLGGK 224
>08_02_0181 +
13923658-13923661,13925518-13925681,13925879-13925978,
13926072-13926244,13926486-13927016
Length = 323
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDGK 574
GFGFITF DPA VD+V+ + ++GK
Sbjct: 30 GFGFITFADPAVVDRVI-EDNHVINGK 55
>03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594
Length = 323
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQ-GTXELDGK 574
GFGF+TF DP +VD + + ELDG+
Sbjct: 64 GFGFVTFSDPEAVDSAIKEMHCQELDGR 91
>07_03_1061 + 23651404-23651625,23651764-23652954
Length = 470
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDGK 574
GFGFIT+ +VDK L + EL+GK
Sbjct: 148 GFGFITYDSEDAVDKALHKNFHELNGK 174
>10_08_0338 + 16916429-16916650,16916728-16917900
Length = 464
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDGK 574
GFGF+ F DP+SVD L LDG+
Sbjct: 48 GFGFVVFSDPSSVDAALVD-PHTLDGR 73
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDGK 574
GFGFITF +VD+VL + +L GK
Sbjct: 170 GFGFITFDAEDAVDRVLHKTFHDLSGK 196
>11_06_0497 + 24337772-24337993,24338042-24338083,24338176-24339357
Length = 481
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDGK 574
GFGFIT+ +VDK L + EL+GK
Sbjct: 162 GFGFITYDSEDAVDKALFKTFHELNGK 188
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDGK 574
GFGFI F DPA ++V+ + +DG+
Sbjct: 48 GFGFIVFADPAVAERVIME-KHMIDGR 73
>08_02_1101 -
24308433-24308978,24309195-24309364,24309443-24309542,
24310337-24310500,24310960-24310996,24311222-24311262,
24313877-24314093
Length = 424
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDGK 574
GFGFIT+ +PA VD+V+ E +GK
Sbjct: 127 GFGFITYSNPAVVDRVM-DDIHEFNGK 152
>07_01_0628 - 4691991-4692806,4694291-4694293,4694527-4694637
Length = 309
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVL-AQGTXELDGK 574
GFGF+TF +P +VD + ELDG+
Sbjct: 50 GFGFVTFSEPRAVDAAIRGMHNGELDGR 77
>03_02_0346 - 7666500-7666646,7666744-7666902
Length = 101
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDGK 574
G+GF+TF DP + L T +DG+
Sbjct: 50 GYGFVTFRDPDGAARALQDPTPVIDGR 76
>01_07_0160 -
41563109-41563468,41563566-41563985,41564082-41564263,
41564362-41564542,41565066-41565084,41565185-41565445,
41566140-41566253,41566264-41566331,41566890-41567018,
41567141-41567245,41567317-41567456,41567519-41567687,
41567824-41567900,41568133-41568187,41568660-41568705,
41568806-41568894,41568996-41569061,41569360-41569425,
41569817-41569906,41570009-41570026
Length = 884
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDG 571
G GFITF SVD ++ Q + ELDG
Sbjct: 134 GIGFITFQSAESVDSIM-QDSHELDG 158
>05_04_0101 -
18003528-18003655,18003951-18003997,18004046-18004077,
18004316-18004453,18004579-18004619,18004967-18005105,
18010981-18011057,18011804-18011858,18012976-18013021,
18013099-18013187,18013304-18013417
Length = 301
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDG 571
G GFITF VD ++ Q T ELDG
Sbjct: 92 GIGFITFRSAECVDNIM-QETHELDG 116
>01_06_1806 + 40012952-40016836
Length = 1294
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 484 MYGKASRRNVMYPISLNIVTFEHFLIR 404
+ GK SR P+S+N+ TFEH L+R
Sbjct: 967 LLGKKSRE----PLSINLATFEHALLR 989
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,731,341
Number of Sequences: 37544
Number of extensions: 243662
Number of successful extensions: 443
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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