Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26i08
(575 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 43 1e-04
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 43 1e-04
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 1.8
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 1.8
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 29 1.8
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 1.8
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 1.8
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/27 (74%), Positives = 21/27 (77%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDGK 574
GFGFITF DP+SVDKVL ELDGK
Sbjct: 87 GFGFITFVDPSSVDKVLNNREHELDGK 113
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDGK 574
GFGF+TF DKV E++GK
Sbjct: 176 GFGFVTFDSDEVADKVCEIHFHEINGK 202
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/27 (74%), Positives = 21/27 (77%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDGK 574
GFGFITF DP+SVDKVL ELDGK
Sbjct: 87 GFGFITFVDPSSVDKVLNNREHELDGK 113
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDGK 574
GFGF+TF DKV E++GK
Sbjct: 176 GFGFVTFDSDEVADKVCEIHFHEINGK 202
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDGK 574
GFGF+TF VD + Q +DGK
Sbjct: 65 GFGFVTFSGKTEVDAAMKQRPHIIDGK 91
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDG 571
GFGF+TF D SVD+ + Q + ++G
Sbjct: 156 GFGFVTFDDHDSVDQCVLQKSHMVNG 181
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDGK 574
GFGF+TF VD + Q +DGK
Sbjct: 27 GFGFVTFSGKTEVDAAMKQRPHIIDGK 53
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDG 571
GFGF+TF D SVD+ + Q + ++G
Sbjct: 118 GFGFVTFDDHDSVDQCVLQKSHMVNG 143
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDGK 574
GFGF+TF VD + Q +DGK
Sbjct: 27 GFGFVTFSGKTEVDAAMKQRPHIIDGK 53
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDG 571
GFGF+TF D SVD+ + Q + ++G
Sbjct: 118 GFGFVTFDDHDSVDQCVLQKSHMVNG 143
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDGK 574
GFGF+TF VD + Q +DGK
Sbjct: 65 GFGFVTFSGKTEVDAAMKQRPHIIDGK 91
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDG 571
GFGF+TF D SVD+ + Q + ++G
Sbjct: 156 GFGFVTFDDHDSVDQCVLQKSHMVNG 181
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDGK 574
GFGF+TF VD + Q +DGK
Sbjct: 65 GFGFVTFSGKTEVDAAMKQRPHIIDGK 91
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 494 GFGFITFGDPASVDKVLAQGTXELDG 571
GFGF+TF D SVD+ + Q + ++G
Sbjct: 156 GFGFVTFDDHDSVDQCVLQKSHMVNG 181
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,045,567
Number of Sequences: 27780
Number of extensions: 266322
Number of successful extensions: 537
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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