Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26i08
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   0.94 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   0.94 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   2.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.9  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   3.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   3.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.7  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 299 HYIKTYKHHYFPFTVTIEIITPLLRGDNFTKQ*ISTQNVYYL 174
           H+     H+Y PF ++  +  P +RG+ +        N YYL
Sbjct: 230 HFYFMLNHNYPPFMLSNSLNFPQIRGEFYFFLHKQVLNRYYL 271


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 299 HYIKTYKHHYFPFTVTIEIITPLLRGDNFTKQ*ISTQNVYYL 174
           H+     H+Y PF ++  +  P +RG+ +        N YYL
Sbjct: 230 HFYFMLNHNYPPFMLSNSLNFPQIRGEFYFFLHKQVLNRYYL 271


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 3   FSNMSGIGGVEYLF*FVLILMTEVDKYVINLSLKKNVELLSVS 131
           F ++ G G V Y+F     L T  + +VINL++   + +  +S
Sbjct: 30  FVSVMGNGMVVYIFLSTKSLRTPSNLFVINLAISDFLMMFCMS 72


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 3   FSNMSGIGGVEYLF*FVLILMTEVDKYVINLSLKKNVELLSVS 131
           F +  G G V Y+F     L T  + +VINL++   + +  +S
Sbjct: 64  FVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCMS 106


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 290 KTYKHHYFPFTVTIEIITPLLRGDNFTKQ*ISTQNVYYLHLTETI 156
           + ++  Y P+T  +EI+  + R DN   Q     N    HLT  +
Sbjct: 462 RPFEVRYDPYTQRVEILDSVDRLDNLMAQ----VNTEMTHLTNAV 502


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -2

Query: 262 LL*PSKSLHHC*GETTSRNNKYQHKTYTICI*QKQFNYSILCI*LTD 122
           L+ P K ++   G T S  +KY    + +C       Y I+ + ++D
Sbjct: 386 LIHPGKDINKLYGMTPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISD 432


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -2

Query: 262 LL*PSKSLHHC*GETTSRNNKYQHKTYTICI*QKQFNYSILCI*LTD 122
           L+ P K ++   G T S  +KY    + +C       Y I+ + ++D
Sbjct: 386 LIHPGKDINKLYGMTPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISD 432


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 218 NFTKQ*ISTQNVYYLHLTETIQLFYIMYLA 129
           NF  Q  +T   +Y+ L   IQ++Y ++ A
Sbjct: 199 NFFYQIYATLGSFYIPLFVMIQVYYKIFCA 228


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 262 LL*PSKSLHHC*GETTSRNNKYQHKTYTIC 173
           L+ P K ++   G T S  +KY    + +C
Sbjct: 324 LIHPGKDINKLYGMTPSDIDKYSRIVFPVC 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,687
Number of Sequences: 438
Number of extensions: 3192
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)