Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26i06
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    27   1.2  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    26   2.7  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    26   2.7  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    26   3.6  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   6.3  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    25   8.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   8.3  

>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 477 QQHVTKVHXFGTASFRKLLHGLLWF*TPSTKSERLAPRTS 358
           ++ + KV  F  A+F  LLH  L   TP  K    APRT+
Sbjct: 242 RRSLKKVSYFNLATFITLLHHCLLVLTPFQKWALSAPRTN 281


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 187 VNKPIFNSYISAQFN*LYTNAY*SLLQRVLVYKQIALNI 71
           V +P       AQF+   TN   SLL  + +Y+Q+A N+
Sbjct: 12  VQRPSAGPVNQAQFSQQRTNQLTSLLHTMTMYQQLAQNV 50


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 155 TNIRIKNGFVYVLHKIHKVIDRHKSEVSLCCVV 253
           T I   +GF Y+L  +H+++D+ +S+ S C +V
Sbjct: 707 TEISGSSGFQYILFILHQLLDK-ESDDSACFLV 738


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 9/37 (24%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 146 ELCTNIRIKNGFVYV-LHKIHKVIDRHKSEVSLCCVV 253
           ++CT + +   F +  +HK+ K++DR    +  C ++
Sbjct: 16  DVCTCLLVDKVFYWSQIHKVRKLVDRSIERMESCSII 52


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 179 FVYVLHKIHKVIDRHKSEVSLCC 247
           ++  L K+HKV+  H S V++ C
Sbjct: 36  YISFLTKLHKVLQTHSSFVNIPC 58


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 468 VTKVHXFGTASFRKLLHGLLWF*TPSTKSERLAPRTSKTTTETSIV 331
           ++ +H F    FR+L H  +W    +TK E      S T TE   V
Sbjct: 487 LSDMHNFVWGRFRELEHAAMWNANRNTKQE----NNSDTDTENDSV 528


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 297 GYMATFNEFEYLQYWFLLSFLMSVALNAPTLW 392
           GY   +   EY    F LS   S + NAPT W
Sbjct: 207 GYKMKYKHPEYHYTDFQLSNGSSYSCNAPTFW 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,918
Number of Sequences: 5004
Number of extensions: 39571
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)