Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26i05
(558 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023838-2|CAA19505.1| 452|Caenorhabditis elegans Hypothetical ... 30 1.3
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 1.7
AF101318-3|AAK68598.1| 336|Caenorhabditis elegans Seven tm rece... 29 1.7
U23452-5|AAK31546.1| 304|Caenorhabditis elegans Hypothetical pr... 29 3.0
AL110478-3|CAB54348.1| 380|Caenorhabditis elegans Hypothetical ... 28 4.0
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical... 27 6.9
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical... 27 6.9
Z68493-9|CAA92796.1| 338|Caenorhabditis elegans Hypothetical pr... 27 9.1
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 9.1
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 27 9.1
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 9.1
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 9.1
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 27 9.1
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 9.1
AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical ... 27 9.1
>AL023838-2|CAA19505.1| 452|Caenorhabditis elegans Hypothetical
protein Y43C5A.2 protein.
Length = 452
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 126 YVSADTDADEPIIYFENITECLTDDQCDKFTYF 28
Y S TD F+N T L D CD+F YF
Sbjct: 327 YSSTYTDLGAKFSTFDNFTGPLGKDDCDEFQYF 359
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Frame = +1
Query: 391 H*RIPRHGLATVSHRIYGQNHRTQFAFVPAQEFYLHVYHHMGHH--ALSQSHHRRYG 555
H H V HR +G++H T + E H HH HH HH +G
Sbjct: 390 HEHAAHHDEHGVHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHG 446
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +1
Query: 409 HGLATVSHRIYGQNHRTQFAFVPAQEFYLHVYHHMGHHALSQSHHRRYG 555
HG H +G++H E H HH HH S +HH +G
Sbjct: 519 HGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHH--SPAHHGHHG 565
>AF101318-3|AAK68598.1| 336|Caenorhabditis elegans Seven tm
receptor protein 69 protein.
Length = 336
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Frame = +2
Query: 158 YSTIVLLVAMIPLT--PLFSRYKDSYLLYSFR-----LIDLLRASKSAHLTKLLSSQAT- 313
+ST+ ++ + + +T P Y S L +S + LL +S SA +++ A
Sbjct: 50 FSTLGIVFSALEITAKPFSHNYNGSLLYFSTSELPETFVSLLMSSWSAFYIIVVAFIAVQ 109
Query: 314 YLYHFACLMKYKDIQKYEVQQLIEWAI 394
++Y + CL Y +K++ + + W I
Sbjct: 110 FVYRYLCLTNYNATKKFDGVKTVFWII 136
>U23452-5|AAK31546.1| 304|Caenorhabditis elegans Hypothetical
protein R07G3.6 protein.
Length = 304
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 152 VRRRPQRRCTLAPTRTPTSLLF 87
+RR+PQ TL PT TPT LF
Sbjct: 159 LRRKPQSIPTLPPTTTPTPRLF 180
>AL110478-3|CAB54348.1| 380|Caenorhabditis elegans Hypothetical
protein Y26D4A.8 protein.
Length = 380
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +1
Query: 331 VFDEIQRHSKIRGAAVDRMGH*RIPRHGLA----TVSHRIYGQN 450
+F E+Q+HS+I A V+++ R H LA T H YG +
Sbjct: 285 LFKELQKHSRILYATVNKIPVVRKTNHALACVRKTTEHLAYGSS 328
>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform b
protein.
Length = 1250
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 114 DTDADEPIIYFENITECLTDDQCDKFTYFAEL 19
+TDADE I+ EN+ +D +KFTY + L
Sbjct: 573 ETDADENCIFAENLQRS-EEDIPNKFTYSSSL 603
>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform a
protein.
Length = 2456
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 114 DTDADEPIIYFENITECLTDDQCDKFTYFAEL 19
+TDADE I+ EN+ +D +KFTY + L
Sbjct: 573 ETDADENCIFAENLQRS-EEDIPNKFTYSSSL 603
>Z68493-9|CAA92796.1| 338|Caenorhabditis elegans Hypothetical
protein C33A12.13 protein.
Length = 338
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +2
Query: 110 VSALTYNDAVAGA*HKYSTIVLLVAMIP---LTPLFSRYKDSYLLYSFRLIDLLRASKSA 280
+ + +ND+ ++++ +A+IP + P F +L+YS + L K+
Sbjct: 10 IETIHFNDSYMNFKYQFNEFPTFLAIIPWLYMIPTFLVIYKIFLIYSKTNWEQLEPGKNK 69
Query: 281 H--LTKLLSSQATYLYHF 328
H LT LS +YL+ F
Sbjct: 70 HVFLTLSLSLIFSYLFFF 87
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +2
Query: 242 FRLIDLLR-ASKSAHLTKLLSSQATY--LYHFACLMKYKDIQKYEVQQLIEWAINASPDM 412
FR++ + + A+ A +TKL + + F C +++ + +L+ W ++ P
Sbjct: 636 FRVLKVEKEAAPPAFVTKLRDKECKEGDVIDFEC-----EVEGWPEPELV-WLVDDQPLR 689
Query: 413 DLQQFRIEFMDKTTELNLRSCQP 481
FR+++ +T +L +R QP
Sbjct: 690 PSHDFRLQYDGQTAKLEIRDAQP 712
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +2
Query: 242 FRLIDLLR-ASKSAHLTKLLSSQATY--LYHFACLMKYKDIQKYEVQQLIEWAINASPDM 412
FR++ + + A+ A +TKL + + F C +++ + +L+ W ++ P
Sbjct: 636 FRVLKVEKEAAPPAFVTKLRDKECKEGDVIDFEC-----EVEGWPEPELV-WLVDDQPLR 689
Query: 413 DLQQFRIEFMDKTTELNLRSCQP 481
FR+++ +T +L +R QP
Sbjct: 690 PSHDFRLQYDGQTAKLEIRDAQP 712
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +2
Query: 242 FRLIDLLR-ASKSAHLTKLLSSQATY--LYHFACLMKYKDIQKYEVQQLIEWAINASPDM 412
FR++ + + A+ A +TKL + + F C +++ + +L+ W ++ P
Sbjct: 636 FRVLKVEKEAAPPAFVTKLRDKECKEGDVIDFEC-----EVEGWPEPELV-WLVDDQPLR 689
Query: 413 DLQQFRIEFMDKTTELNLRSCQP 481
FR+++ +T +L +R QP
Sbjct: 690 PSHDFRLQYDGQTAKLEIRDAQP 712
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +2
Query: 242 FRLIDLLR-ASKSAHLTKLLSSQATY--LYHFACLMKYKDIQKYEVQQLIEWAINASPDM 412
FR++ + + A+ A +TKL + + F C +++ + +L+ W ++ P
Sbjct: 636 FRVLKVEKEAAPPAFVTKLRDKECKEGDVIDFEC-----EVEGWPEPELV-WLVDDQPLR 689
Query: 413 DLQQFRIEFMDKTTELNLRSCQP 481
FR+++ +T +L +R QP
Sbjct: 690 PSHDFRLQYDGQTAKLEIRDAQP 712
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +2
Query: 242 FRLIDLLR-ASKSAHLTKLLSSQATY--LYHFACLMKYKDIQKYEVQQLIEWAINASPDM 412
FR++ + + A+ A +TKL + + F C +++ + +L+ W ++ P
Sbjct: 636 FRVLKVEKEAAPPAFVTKLRDKECKEGDVIDFEC-----EVEGWPEPELV-WLVDDQPLR 689
Query: 413 DLQQFRIEFMDKTTELNLRSCQP 481
FR+++ +T +L +R QP
Sbjct: 690 PSHDFRLQYDGQTAKLEIRDAQP 712
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +2
Query: 242 FRLIDLLR-ASKSAHLTKLLSSQATY--LYHFACLMKYKDIQKYEVQQLIEWAINASPDM 412
FR++ + + A+ A +TKL + + F C +++ + +L+ W ++ P
Sbjct: 636 FRVLKVEKEAAPPAFVTKLRDKECKEGDVIDFEC-----EVEGWPEPELV-WLVDDQPLR 689
Query: 413 DLQQFRIEFMDKTTELNLRSCQP 481
FR+++ +T +L +R QP
Sbjct: 690 PSHDFRLQYDGQTAKLEIRDAQP 712
>AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical
protein Y49F6B.9 protein.
Length = 382
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 228 ICCIRFVS*TFCELLN-RRTLPNCCLRKQLTYTIL 329
+CC + FC+L+N R C+RK + +IL
Sbjct: 43 LCCEMVPAGAFCQLINCRHVYCRICIRKYMELSIL 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,303,398
Number of Sequences: 27780
Number of extensions: 279209
Number of successful extensions: 865
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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