Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26h23
(506 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 29 0.53
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 28 0.70
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 27 1.6
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 1.6
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 2.1
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 2.8
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ... 26 2.8
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 26 3.7
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 25 4.9
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 6.5
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 25 6.5
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 25 6.5
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 8.6
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.7 bits (61), Expect = 0.53
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 41 SAASAIPSLVDAFSSSKPPQTDTPP 115
S S+ PSL + +S PP T TPP
Sbjct: 158 STVSSTPSLNHSLQNSMPPSTPTPP 182
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 28.3 bits (60), Expect = 0.70
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 225 LLNV*SSLFNACTSILPAPKPNRTVSLCNHYQTSPPS*KAT 347
+L V S +++A TS LP+ V+L Q SPPS K T
Sbjct: 131 VLFVNSGMWSASTSFLPSSFAMNMVTLALSAQLSPPSTKRT 171
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 27.1 bits (57), Expect = 1.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 5 DLFMEEIVPLVVSAASAIPSLVDAFSSSKPPQTD 106
D+F + +P++ ++A IPSL A SK P T+
Sbjct: 241 DIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 1.6
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 254 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 367
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 335 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 424
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 2.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 95 GVWKKRKHRPRREWPKRQKRLKAQF 21
G WKK + + EW K ++ KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -1
Query: 116 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQF 21
+A + + WKK + + EW K ++ KA++
Sbjct: 123 KAREEDKAEWKKAREEDKAEWKKAREEDKAEW 154
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -1
Query: 116 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQF 21
+A + + WKK + + EW K ++ KA++
Sbjct: 134 KAREEDKAEWKKAREEDKAEWKKAREEDKAEW 165
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -1
Query: 116 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQF 21
+A + + WKK + + EW K ++ KA++
Sbjct: 145 KAREEDKAEWKKAREEDKAEWKKAREEDKAEW 176
>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 47 ASAIPSLVDAFSSSKPPQTDTPPARSMD 130
A+ P++V F + PQ D PP R+++
Sbjct: 211 ATGYPAIVVPFLNGSLPQADLPPLRTIE 238
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 3.7
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +2
Query: 272 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 442
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 443 DVTVEXRQMCWPPL 484
DV+ E ++ PL
Sbjct: 367 DVSDEEQRFLSTPL 380
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 4.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 462 LXSTVTSAVVQQRSTVTGILRLGAEGKTTAS 370
L +T+T V + + +L++ AEGK TAS
Sbjct: 520 LIATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 35 VVSAASAIPSLVDAFSSSKPPQTDTPPARS 124
V ++S +P F SSKP + PPA S
Sbjct: 312 VSPSSSFVPMYPTTFPSSKPQIVNAPPAPS 341
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 223 VSSTFDHPFSTPVLRSYRHRNQIEQ 297
V TFD P S P+L S + +EQ
Sbjct: 200 VQQTFDIPMSKPILVSSKTGKNVEQ 224
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 25.0 bits (52), Expect = 6.5
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Frame = +3
Query: 231 NV*SSLFNACTSILPAPKPNRTVSLC----NHYQTSPP 332
+V SSL T +LP +R + LC NH+ S P
Sbjct: 214 SVMSSLLKGGTVLLPVDAASRVLELCCILDNHWSASQP 251
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 24.6 bits (51), Expect = 8.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 59 PSLVDAFSSSKPPQTDTPPARSM 127
PS++ SSS P + PP+ S+
Sbjct: 132 PSIISISSSSSDPSSSPPPSSSL 154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,776
Number of Sequences: 5004
Number of extensions: 27416
Number of successful extensions: 122
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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