Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26h23
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0041 - 464695-464850,467485-469029                               29   2.8  
01_05_0227 - 19512866-19514983                                         29   2.8  
08_01_0927 - 9123473-9123589,9124534-9124616,9125177-9125252,912...    27   8.7  
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33...    27   8.7  

>04_01_0041 - 464695-464850,467485-469029
          Length = 566

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 239 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 415
           +I   R + D++ T  +SN + V +LP VSS  + Y D ++   +    P   P  ++ V
Sbjct: 40  LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99

Query: 416 TVD 424
            +D
Sbjct: 100 PLD 102


>01_05_0227 - 19512866-19514983
          Length = 705

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 456 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 364
           S +T + +QQ   +  ++ LG  GKTT ++L
Sbjct: 18  SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48


>08_01_0927 -
           9123473-9123589,9124534-9124616,9125177-9125252,
           9125641-9125740,9125996-9126064,9126122-9126207,
           9126293-9126430,9126688-9126810,9128130-9129719,
           9129929-9130402
          Length = 951

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 41  SAASAIPSLVDAFSSSKPPQTDTPPARSM 127
           S+AS  P     +SSS PP++ TPP + +
Sbjct: 3   SSASEQPRGDQVWSSSSPPRSSTPPPQPL 31


>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
            336577-336734,337180-337310,337385-337472,337587-337690,
            338346-338444,339060-339116,339262-339337,339519-339602,
            339969-340010,340128-340198,341516-341564,342370-342441,
            343149-343286,343393-343473,344166-344353,344591-345188,
            345274-345342,346729-346854,347048-347175,347986-348142,
            348342-348388,348472-348535,348691-348765,349292-349414,
            349797-349982,351179-351303,351390-351459,351974-352101,
            352585-352726,353065-353163,353239-353285,353598-353652,
            353758-353967,354686-354757,354836-354905,355231-355414,
            355521-355644,355732-355863,356252-356317,356805-356852,
            357572-357676,357728-357865,358097-358399,358482-358594,
            359082-359148,359236-359310,359395-359517,359610-359618,
            360156-360320,360401-360502,361545-361696,361794-361995,
            362079-362126,362215-362298,362613-362657,363302-363385,
            363890-363970,364044-364133,364217-364279,364824-364841,
            365238-365378,365494-365550,366091-366185,366275-366383,
            367067-367156,367308-367387,367480-367558,367742-367903,
            368005-368136,368335-368469,368553-368618,369317-369457,
            369575-369648,369685-369910
          Length = 2905

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 466  LPPFNCDVSSSPTKVNCDGYLEARGGRENDSLKIDKIRV 350
            +P F+ +  +   K   DG+++A  G   +++ IDKI +
Sbjct: 1183 IPHFSKEAVAHSVKTVVDGFMDAMDGNLAETVVIDKINI 1221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,993,896
Number of Sequences: 37544
Number of extensions: 212148
Number of successful extensions: 676
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)