Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26h23
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28928-1|AAA68334.3|  589|Caenorhabditis elegans Anchor cell fus...    29   1.5  
EF205023-1|ABP04049.1|  589|Caenorhabditis elegans anchor cell f...    29   1.5  
AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical...    29   1.5  
U80445-1|AAB37794.1|  855|Caenorhabditis elegans Hypothetical pr...    27   5.9  
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF098999-3|AAC68726.2|  445|Caenorhabditis elegans Hypothetical ...    27   7.8  
AF067219-14|AAC17034.1|  206|Caenorhabditis elegans Hypothetical...    27   7.8  

>U28928-1|AAA68334.3|  589|Caenorhabditis elegans Anchor cell fusion
           failure protein1 protein.
          Length = 589

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 460 PFNCDVSSSPTKVNCDGYLEARGGRENDSLKIDK 359
           P +C V+S P K  CD  L+ R GR   ++K+ +
Sbjct: 158 PLDCPVTSIPAKACCDIKLKPRDGRMFRAVKLQQ 191


>EF205023-1|ABP04049.1|  589|Caenorhabditis elegans anchor cell
           fusion failure-1 protein.
          Length = 589

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 460 PFNCDVSSSPTKVNCDGYLEARGGRENDSLKIDK 359
           P +C V+S P K  CD  L+ R GR   ++K+ +
Sbjct: 158 PLDCPVTSIPAKACCDIKLKPRDGRMFRAVKLQQ 191


>AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical
           protein Y73F8A.16 protein.
          Length = 396

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD 352
           F  L F++TG E KS  V + S+    +I  GYR+
Sbjct: 37  FPELNFNITGLEEKSRYVVLLSIEKYDNIRYGYRN 71


>U80445-1|AAB37794.1|  855|Caenorhabditis elegans Hypothetical
           protein C50F2.3 protein.
          Length = 855

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 493 ERMKGWPAHLPPFNCDVSSSPTKVNC 416
           E MKG  +   PF  D+  +PT VNC
Sbjct: 17  ETMKGISSEDVPFEEDIIRNPTSVNC 42


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical
           protein C25H3.8 protein.
          Length = 2148

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 266 DLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 409
           DL G +    +  V + PNV S      + +L NL++V   +AP L I
Sbjct: 203 DLVGEKAFQQAAFVLTSPNVFSRRFDLNNKFLRNLDSVFSKNAPDLTI 250


>AF098999-3|AAC68726.2|  445|Caenorhabditis elegans Hypothetical
           protein W04C9.3 protein.
          Length = 445

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 353 AYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEXRQMCWPPLHPL 493
           AY+  +EA+ FP  PS+     + LC   +D   E R M  P   PL
Sbjct: 236 AYMA-IEAISFPDQPSISFSCQIKLCDKGSD---ECRGMSPPACTPL 278


>AF067219-14|AAC17034.1|  206|Caenorhabditis elegans Hypothetical
           protein R12E2.13 protein.
          Length = 206

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 310 LHSDTVRFGFGAGKIEVQALKRDD 239
           LHS  V++G G+G+  V A+K  D
Sbjct: 43  LHSHDVKYGSGSGQQSVTAVKNSD 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,684,627
Number of Sequences: 27780
Number of extensions: 164074
Number of successful extensions: 582
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)