Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26h19
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    30   0.38 
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.7  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   4.7  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    26   6.2  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        25   8.2  

>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 139 KKFIINHNHEQVDETNKQEVVDKTDATTYNS 231
           KKF++NH+   +D+ +    V   D T Y++
Sbjct: 183 KKFVVNHSETDIDKNDNHVSVQTEDGTIYHA 213


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +1

Query: 46  VKYHMPLHYQCDINADKNV-VNAYDAIDVDPNKKFIINHNHEQVDETNKQEVVDKTDATT 222
           VKYH P         ++ V  N YD +  +PN   II    +  DE N  + ++  D   
Sbjct: 198 VKYH-PTEVHPSWTVEEPVHYNTYDGVVNEPNSSVIIEELDDDYDELN--DPMNNNDTPI 254

Query: 223 YNS 231
            NS
Sbjct: 255 TNS 257


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = +1

Query: 1    EETFNMDSSNCIKIDVKYHMPLHYQCDINADKNVVNAYDAIDVDPNKKFIINHNHEQVDE 180
            +ET+ M+ +N     VK    + YQ +I+     V  +  ++VDP+K    +     +D 
Sbjct: 838  KETYQMEITN-----VKRFKLIIYQRNIHTGLETVYGHATLEVDPDKLKQGHGKDVWLDI 892

Query: 181  TNKQEVV 201
            TNK +++
Sbjct: 893  TNKGQIL 899


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 141 FVGVNIDSVIRIYNVFICVNVTLIM 67
           F  +N D+ I IY+ F+C +  LIM
Sbjct: 330 FPTLNPDAYIYIYSYFLCKDTVLIM 354


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/78 (17%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
 Frame = +1

Query: 1   EETFNMDSSNCIKIDVKYHMPLHYQCDINADKNVVNAYDAIDVDPNKK-------FIINH 159
           E+    D ++   +D     PLH+ C +     +       ++ P++K        +I+ 
Sbjct: 20  EQAIQNDPNSLNAVDDDKRTPLHWACSVGKVNTIYFLLKQPNIKPDEKDEAGWTPLMISI 79

Query: 160 NHEQVDETNKQEVVDKTD 213
           N+  V +   +E+++++D
Sbjct: 80  NNRSVPDNVIEELINRSD 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,463
Number of Sequences: 5004
Number of extensions: 37695
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)