Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26h17
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0737 - 26794015-26794483,26795477-26795606,26796226-26796409     28   7.0  
11_06_0257 + 21746643-21748091                                         28   7.0  
12_02_0790 - 23168952-23169456,23170338-23170467,23170580-23170847     27   9.3  

>11_06_0737 - 26794015-26794483,26795477-26795606,26796226-26796409
          Length = 260

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 153 ESRYNILVAAVGSKKPGSSDRLRLLEKL 236
           E R+N L  A G K+ G S RLR L  L
Sbjct: 51  EGRWNALARAAGLKRTGKSCRLRWLNYL 78


>11_06_0257 + 21746643-21748091
          Length = 482

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +2

Query: 14  SFDPSGQVFYNLST*TVKSSPILLNQCA*LSSDLHNFVFHFLKST*RIPL*HFGGSGGIQ 193
           S+  + + F  L   + K  P LL  C     D          +T RIP+   GG GG +
Sbjct: 43  SWHAAYRTFRRLRLPSPKQPPCLLYSCDAYGPDAAGLYCPSTGATYRIPVSCGGGGGGFR 102

Query: 194 KTRVLGSS 217
              ++GS+
Sbjct: 103 NLTLIGSA 110


>12_02_0790 - 23168952-23169456,23170338-23170467,23170580-23170847
          Length = 300

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 153 ESRYNILVAAVGSKKPGSSDRLRLLEKL 236
           E R+N L  A G K+ G S RLR L  L
Sbjct: 79  EGRWNSLARAAGLKRTGKSCRLRWLNYL 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,369,839
Number of Sequences: 37544
Number of extensions: 390711
Number of successful extensions: 862
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)