Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26h16
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    25   7.4  
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    25   7.4  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    25   9.8  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    25   9.8  

>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 527 RGHDNKRVETSSRPNRAKLKHVKRIE 450
           RG + ++    S PN  KLKH+K I+
Sbjct: 311 RGANGQKNRFRSNPNDPKLKHLKFIQ 336


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 366 KEHCNNCNEIYCYN 325
           + HC  C +++CYN
Sbjct: 46  RHHCRWCGKLFCYN 59


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -2

Query: 366 KEHCNNCNEIYCYNSTAQRM 307
           K HC NC  ++C   +++ +
Sbjct: 189 KHHCRNCGGVFCNQCSSKTL 208


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 339 FHCNYYNVPLFVVNCPENTAYSYVSDGCIDF--NSSDCPFYPLNVL 470
           F  N  ++ L+ +  P+N     +  GCID+     +C   P+ +L
Sbjct: 350 FVINVLSIALYKLFTPKNRYMKALESGCIDYFKRGGNCVEGPIRLL 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,659,166
Number of Sequences: 5004
Number of extensions: 28803
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)