Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26h16
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical pr...    28   3.9  
X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic...    28   3.9  
X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic...    28   3.9  
U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated p...    28   3.9  
U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine rece...    28   3.9  

>Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical
           protein T04A8.1 protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +1

Query: 283 VKLIKLEKHTLCRGIVTIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLTAQTARSIRL 462
           + ++ L   TLC  +V I+F+A I     L   +    R   +  +++ +   T  SI++
Sbjct: 201 ISILHLFHFTLCFVLVIIFFVATILGLTMLKQRIKSAERSLTIVTMIMAVQTVTFASIQI 260


>Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical
           protein R09E10.5 protein.
          Length = 1459

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 384 PENTAYSYVSDGCIDFNSSDCPFYPLNVL*FGTIRSRRCFNTFIVVSAIT 533
           P+N   + VS G I   + + PFY +N++ FG        N  ++ S +T
Sbjct: 61  PQNPTINQVSPGQIFSGTGNNPFYGVNLVPFGPEAGDLMVNPSMLTSGMT 110


>X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +1

Query: 301 EKHTLCRGIV---TIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLT 435
           EK TLC  I+   TI+F+ +  +    S T+P   +  +  MV++TL+
Sbjct: 287 EKVTLCISILVALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVTLS 334


>X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +1

Query: 301 EKHTLCRGIV---TIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLT 435
           EK TLC  I+   TI+F+ +  +    S T+P   +  +  MV++TL+
Sbjct: 287 EKVTLCISILVALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVTLS 334


>U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated
           protein 38 protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +1

Query: 301 EKHTLCRGIV---TIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLT 435
           EK TLC  I+   TI+F+ +  +    S T+P   +  +  MV++TL+
Sbjct: 287 EKVTLCISILVALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVTLS 334


>U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 12 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 338 YIVTIPRHSVCFSSLISFTQRPKKICQCFVCIYI-RRKI 225
           ++VT  ++ +CFS+L +       I   +VCI I RRKI
Sbjct: 172 HVVTGTKNILCFSALYTILHMTIPITPVYVCILILRRKI 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,368,146
Number of Sequences: 27780
Number of extensions: 169640
Number of successful extensions: 549
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)