Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26h13
         (114 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    23   4.0  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    23   5.3  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    23   7.0  

>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 20  HKIVYIIFLIIVNFESLML 76
           HK+ Y+     VNF S+M+
Sbjct: 189 HKLTYLALFTFVNFWSIMI 207


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 17   AHKIVYIIFLIIVNFESLMLFLFRNKFLDEKK 112
            +H  + IIF   V     ++F F  K+ DE++
Sbjct: 1022 SHSFLVIIFACSVILNLSLMFCFGAKYWDERQ 1053


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 29  VYIIFLIIVNFESLMLFLFRNKFLDEKK 112
           VYIIF+II+    L+  LF     D +K
Sbjct: 187 VYIIFIIIMACAVLLAILFIKSPSDVRK 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 360,949
Number of Sequences: 5004
Number of extensions: 2880
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 19
effective length of database: 2,267,402
effective search space used: 40813236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)