Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26h13
         (114 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         20   3.2  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    20   3.2  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    20   3.2  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    18   9.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    18   9.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    18   9.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    18   9.7  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 64  FKIDNYQENDIN 29
           F+  +YQ+NDI+
Sbjct: 283 FRTSDYQQNDIH 294


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 64  FKIDNYQENDIN 29
           F+  +YQ+NDI+
Sbjct: 283 FRTSDYQQNDIH 294


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 64  FKIDNYQENDIN 29
           F+  +YQ+NDI+
Sbjct: 283 FRTSDYQQNDIH 294


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -3

Query: 55  DNYQENDINNF 23
           +NY  N+ NN+
Sbjct: 94  NNYNNNNYNNY 104


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -3

Query: 55  DNYQENDINNF 23
           +NY  N+ NN+
Sbjct: 94  NNYNNNNYNNY 104


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -3

Query: 55  DNYQENDINNF 23
           +NY  N+ NN+
Sbjct: 331 NNYNNNNYNNY 341


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -3

Query: 55  DNYQENDINNF 23
           +NY  N+ NN+
Sbjct: 339 NNYNNNNYNNY 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,319
Number of Sequences: 438
Number of extensions: 187
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 18
effective length of database: 138,459
effective search space used:  2630721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)