Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26h11
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.8  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = +2

Query: 164 MQQYYTLFD---DPAQRANLVNMYNVETSFMTFEGV 262
           + Q YT FD   DP +  N+  +  V   +M   G+
Sbjct: 440 LNQLYTAFDVLTDPKKNPNVYKVETVGDKYMAVSGL 475


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = +2

Query: 164 MQQYYTLFD---DPAQRANLVNMYNVETSFMTFEGV 262
           + Q YT FD   DP +  N+  +  V   +M   G+
Sbjct: 440 LNQLYTAFDVLTDPKKNPNVYKVETVGDKYMAVSGL 475


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 355 WLGIHSSYYSSDFLKSQT 302
           W+GIH    +SD   +QT
Sbjct: 353 WMGIHEPETTSDATSAQT 370


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 355 WLGIHSSYYSSDFLKSQT 302
           W+GIH    +SD   +QT
Sbjct: 353 WMGIHEPETTSDATSAQT 370


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 361 KHWLGIHSSYYS 326
           K+WL +H+SY S
Sbjct: 436 KNWLPVHTSYKS 447


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 624 YKKNIMCTKCQEF 586
           YK N+ C KC  +
Sbjct: 144 YKSNLKCDKCSTY 156


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -1

Query: 417 GGSSSHFNLPRTLIKTPPSNIG 352
           G S    NL   L+  PP N G
Sbjct: 364 GSSIPKLNLSTALMSQPPPNFG 385


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -3

Query: 361 KHWLGIHSSYYSSDFLKSQTI*FFHNFNSTLQLYSLK 251
           + W  + ++  +     SQ     H+F STL + S+K
Sbjct: 360 RSWSSLDNTNTNDQDYSSQNYLTVHSFPSTLNIPSVK 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,775
Number of Sequences: 438
Number of extensions: 4072
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)