Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26h09
(412 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0467 - 18479199-18479543,18481145-18481417 47 5e-06
07_03_1343 - 25905475-25905678,25907025-25907167,25907273-259073... 29 1.1
11_05_0074 + 18850567-18851095,18851249-18851274,18851353-188516... 28 3.3
09_01_0069 - 1010888-1011226,1011412-1011600 28 3.3
04_03_0558 + 17111138-17111996,17112474-17112564,17112647-171132... 27 4.4
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 27 5.8
06_03_1309 + 29223197-29223240,29223358-29223592,29223695-292237... 27 7.7
03_01_0283 + 2193632-2195182 27 7.7
>07_03_0467 - 18479199-18479543,18481145-18481417
Length = 205
Score = 47.2 bits (107), Expect = 5e-06
Identities = 29/87 (33%), Positives = 46/87 (52%)
Frame = +3
Query: 147 LQVRNYADAPKGDEMALTFAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPG 326
+Q R A ++ + F K + V + VP+ +G G+LP HV T+A L+PG
Sbjct: 61 MQPRPPTPAAIPSKLTVNFVLPYKSEIANKEVDMVIVPATTGQMGVLPGHVSTIAELKPG 120
Query: 327 VVTILENDGKQNKIFVSSGTITVNDDS 407
V+++ E + K FVSSG V+ +S
Sbjct: 121 VLSVHEGN-DITKYFVSSGFAFVHANS 146
>07_03_1343 -
25905475-25905678,25907025-25907167,25907273-25907366,
25907526-25907687,25907884-25907952,25908631-25908843,
25909054-25909113,25909294-25909382,25909745-25910063
Length = 450
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 291 KHVPTLAVLRPGVVTILENDGKQNKIF 371
KH P + R G +++ E DGK+NK++
Sbjct: 233 KHPPGDEIYRSGTLSMFEVDGKKNKVY 259
>11_05_0074 +
18850567-18851095,18851249-18851274,18851353-18851645,
18851898-18852699,18852874-18853022,18853105-18853393,
18853479-18853517,18853623-18853661
Length = 721
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 237 VVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTI--LEND--GKQNKIF 371
++ Q D F G + KH P +A L P VVTI L+N+ G N I+
Sbjct: 533 ILGQHDGKPFLGPTNYIVKHAPEVAFLDPQVVTITNLQNNRQGMVNYIY 581
>09_01_0069 - 1010888-1011226,1011412-1011600
Length = 175
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 389 NCARRYEDF-ILFPIIFKNCNNTRSKNSQGR 300
NC+R ++ +LFP K+ TR KN +GR
Sbjct: 136 NCSRVFDPLDLLFPFSPKSERKTRDKNDRGR 166
>04_03_0558 +
17111138-17111996,17112474-17112564,17112647-17113268,
17113378-17113457,17113871-17113937,17114138-17114263,
17114333-17114415,17115334-17115777,17115834-17115927,
17116038-17116124,17116474-17116594,17116671-17116709,
17116828-17116997
Length = 960
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -3
Query: 245 FDNLFVIKDLITRSEGQCHFVTFGSICIVTYLKPTSYISDYTTECQ 108
FD + + R E C +TFG I KP +T+EC+
Sbjct: 591 FDRICLTNQRTNRYELHCQMITFGK-AICRKSKPNCGACPFTSECK 635
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 27.1 bits (57), Expect = 5.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 219 PYYPQRRSMPFRHLWEHLHSYV 154
P+ P+ + +P HLW H+ +V
Sbjct: 308 PFGPRDKYIPKEHLWPHIQEFV 329
>06_03_1309 +
29223197-29223240,29223358-29223592,29223695-29223783,
29223870-29223968,29224065-29224158,29224297-29224514,
29224861-29224967,29225298-29225472,29225596-29225743,
29226548-29226596,29228016-29228162,29229990-29229996,
29230417-29230482,29230773-29231991,29232073-29233149,
29233226-29233355,29233519-29233617,29233817-29233878,
29234429-29234533
Length = 1389
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +1
Query: 19 LLSEIGKKIAESKFPFVII*IRKER*SEWHW 111
LL IGK +P + K EWHW
Sbjct: 844 LLCAIGKDANNQMYPIAWAVVHKANKEEWHW 874
>03_01_0283 + 2193632-2195182
Length = 516
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 141 RRLQVRNYADAPKGDEMALTF-AAGNKVF 224
R + N+A+ PKGDE A F GN +F
Sbjct: 89 RHIFTSNFANYPKGDEYAEIFDVLGNGIF 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,809,184
Number of Sequences: 37544
Number of extensions: 204491
Number of successful extensions: 441
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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