Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26h01
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    30   0.27 
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch...    28   1.4  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    26   5.7  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   5.7  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   7.6  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   7.6  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    25   7.6  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   10.0 
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   10.0 

>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +2

Query: 179 YVNYEKAVRVHVDVKYKTTYEQACINISKE---NRVKHGDPLYLSPQTILLDKIGVIQLF 349
           +V+  + ++ ++    + TY +A + I+K    N+V+H   LYL  Q IL D +  +   
Sbjct: 205 WVSILRRLQSNISTSERITYTKAILAIAKHHCWNKVEHSALLYLEHQLILYDTLTFVVHL 264

Query: 350 MRSK 361
           +  K
Sbjct: 265 LSQK 268


>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
           Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +2

Query: 143 KFVAKDIARSLKYVNYEKAVRVHVDVKYKTTYEQAC-INISKENRVKHGDPLYLSPQTIL 319
           +F+  D+ + +  ++   A  +   +  K TY+    +N     R+ H D   L PQ +L
Sbjct: 85  EFLDMDLKKYMDRISETGATSLDPRLVQKFTYQLVNGVNFCHSRRIIHRD---LKPQNLL 141

Query: 320 LDKIGVIQL 346
           +DK G ++L
Sbjct: 142 IDKEGNLKL 150


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +2

Query: 128  DEQPVKFVAKDIARSLKYVNYEKAVRVHVDVKYKT---TYEQACINISKENRVKHGDPLY 298
            +EQ V+FV++ +   L Y+ + K + +H D+K       ++  C  IS     KH D +Y
Sbjct: 928  EEQLVRFVSRQVLYGLSYL-HSKGI-IHRDLKADNLLIDFDGVC-KISDFGISKHSDNVY 984


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 139 GQVCGQGHCPQFKICKL*KGSTC 207
           G+ C    C   K CKL KGS C
Sbjct: 332 GEDCENNPCCDGKTCKLTKGSLC 354


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 287 DPLYLSPQTILLDKIGVIQLFMRSKMHNAAELQNWFYEH 403
           D L ++    L+DK+G  ++       N A+L NW   H
Sbjct: 680 DLLIVNKSQPLVDKLGKPEILFMGPDENTADLVNWATIH 718


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 519 YSSVVAA*KWPSTGAELNFTVAWASWSRLNADAVHWGNTCS*NQFC 382
           Y  VV + +W      ++  +A ++W+RL+ + V +G   S  Q C
Sbjct: 122 YFGVVNSSEW-DIPKWIDMDIAHSNWNRLSREGVLYGGMKSYRQMC 166


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -3

Query: 142 DRLLVAEHVSE---RELVLAEFELPDFN 68
           +RLL+  H +E     L LA+ +LPDFN
Sbjct: 67  NRLLLGTHAAEGMPNFLQLADLDLPDFN 94


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 209 EHVLPFHNLHILNC 168
           EHVLP   L +LNC
Sbjct: 404 EHVLPIRQLFLLNC 417


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 402  CS*NQFCSSAALCILERMNSCITPILSSNIVWG 304
            C  N FC      ++  +  C  PI+ +N+V G
Sbjct: 952  CLSNNFCMEHLPLLITILEKCDNPIIRNNLVIG 984


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,218
Number of Sequences: 5004
Number of extensions: 50579
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)