Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26g19
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    26   2.7  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   3.6  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    25   3.6  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   3.6  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    25   6.2  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   6.2  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    24   8.2  

>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +2

Query: 26  NFVDVDTFARQLITDKCSALIKNADLLPANILEIVEKARDRYFNEPT--QKNYEYIKKLF 199
           +  D + F R++  D   A+  N +    N L+++EKA     N P   Q + +  K +F
Sbjct: 59  SLADPNHFIRKVENDNMDAISANINSKLENRLKVLEKAISSITNSPIAGQISLKSEKDVF 118

Query: 200 LRTKYXDDSID 232
           L+     D I+
Sbjct: 119 LQGLLSMDEIE 129


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -3

Query: 238 FIIYRIVXVFCS*K*FFNVFIVFLSWLIKIPVS 140
           ++I+  + +  S   FF+  +V +SWL+++P S
Sbjct: 118 WLIFLFITIGISASDFFSTNLVTISWLLQLPDS 150


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 132 KRPETGILMSQLKKTMNTLKNY 197
           K+P+ G+ +S L+KT+N  +N+
Sbjct: 137 KKPKDGLDLSALQKTLNGSRNF 158


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 56  QLITDKCSALIKNADLLPANILEIVEKARDRYFNEPTQKNYEYIKKLFLRTKY 214
           QL+  KC +     D+L    +E ++KA+D    E  Q   E    LF +  +
Sbjct: 803 QLLRKKCGSFCSADDVLIFKAVESLKKAKDTVDIEERQSLIELSYTLFKKAAH 855


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +2

Query: 20  SNNFVDVDTFARQLITDKCSALIKNADLLPANILEIVEKARDRYFNEPT 166
           +NNF+   T   +   +  +   K+ DLL  N+L  +    +R    PT
Sbjct: 579 NNNFITPKTVHNKQAAETTNDQNKDKDLLYLNLLPYINSITERNSASPT 627


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 152 FNEPTQKNYEYIKKLFLRTKYXDDS-IDYKDFNRRILLI 265
           F EP  K Y  +K+LF  TKY  D  I ++D     LLI
Sbjct: 138 FTEPQIKCY--MKQLFAGTKYLHDQLILHRDLKAANLLI 174


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 149 YFNEPTQKNYEYIKKLFLRTKYXD 220
           Y+NE  +   EYIKK+  R +  D
Sbjct: 138 YYNEKYEVGAEYIKKVIARLQSYD 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,608,828
Number of Sequences: 5004
Number of extensions: 29457
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)