Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26g19
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0007 - 6956215-6956223,6957082-6957300,6957874-6957978,695...    27   6.0  
09_06_0258 + 21900685-21901927,21902571-21902710                       27   6.0  
05_07_0290 + 29016410-29018920                                         27   6.0  
03_06_0678 - 35480711-35484658                                         27   6.0  
02_05_0227 - 26994462-26994591,26994714-26994803,26994895-269950...    27   6.0  

>10_03_0007 -
           6956215-6956223,6957082-6957300,6957874-6957978,
           6958062-6958175,6958342-6958467,6958583-6958697,
           6958791-6958867,6958956-6959179,6959848-6959953,
           6960065-6960163,6960282-6960467,6960611-6960613
          Length = 460

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 161 PTQKNYEYIKKLFLRTKYX-DDSIDYKDFNRRI 256
           P + N E IK L+    +  DD +DYK+F R I
Sbjct: 356 PDRLNSEEIKDLWSEADHDGDDIVDYKEFQRCI 388


>09_06_0258 + 21900685-21901927,21902571-21902710
          Length = 460

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 18/75 (24%), Positives = 32/75 (42%)
 Frame = +2

Query: 143 DRYFNEPTQKNYEYIKKLFLRTKYXDDSIDYKDFNRRILLIVFXFALNKSASYFPSYKEI 322
           D+  N P +    +I +  +        + + D  R I++        ++ASY P  KEI
Sbjct: 191 DQLRNPPDKNEVLHITEKVITFINDPHLVAFVDLWRGIIICDILDTKTQTASYVPMLKEI 250

Query: 323 IEVAIKRLNXINPDL 367
           I +   R + I  D+
Sbjct: 251 INLRRTRASSITRDI 265


>05_07_0290 + 29016410-29018920
          Length = 836

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 122 EIVEKARDRYFNEPTQKNYEYIKKLFLRTKYXDDSIDY 235
           E  +    +Y  +PT +NY  +  L  R  Y D+++D+
Sbjct: 585 EYFDSMETKYGVKPTTENYACMVDLLARCGYLDEAMDF 622


>03_06_0678 - 35480711-35484658
          Length = 1315

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = -1

Query: 156 LKYLSLAFSTISKMFAGNRSAFLIRALHLSVISCLANVSTSTKLLEVI 13
           L+YL L++S I  +       + ++ L+LS+  CL  +    K +  +
Sbjct: 598 LRYLDLSYSKIEALPEDISILYHLQTLNLSICDCLCQLPNGMKYMTAL 645


>02_05_0227 -
           26994462-26994591,26994714-26994803,26994895-26995022,
           26995179-26995573,26995666-26995792,26995909-26995986,
           26996096-26996198,26996315-26996589,26996700-26996726
          Length = 450

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/50 (22%), Positives = 28/50 (56%)
 Frame = +2

Query: 44  TFARQLITDKCSALIKNADLLPANILEIVEKARDRYFNEPTQKNYEYIKK 193
           + AR++I + CS++IK    +P+N   +   ++ +      Q+  +++K+
Sbjct: 112 SLARRVIEEGCSSIIKEKQNVPSNKSSVSSASKKQPIPSGQQQKPKFVKE 161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,481,409
Number of Sequences: 37544
Number of extensions: 156334
Number of successful extensions: 278
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)