Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26g18
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces pombe...    86   4e-18
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    28   1.2  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    26   3.6  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    25   6.3  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   8.4  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   8.4  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    25   8.4  

>SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 193

 Score = 85.8 bits (203), Expect = 4e-18
 Identities = 49/120 (40%), Positives = 73/120 (60%), Gaps = 6/120 (5%)
 Frame = +2

Query: 254 GYSQSSNANYAESSKDSDSNLLLIKKLWDVALGPLKQVPMNLFIMYMAGNSISIFPIMMV 433
           G S SS + +A+  ++   +LLL KK W++A  PLKQ+PMN  + YM+GNS+ IF IM  
Sbjct: 50  GNSASSTSIFAKREEELQKDLLL-KKAWELAYSPLKQIPMNAILAYMSGNSLQIFSIMTT 108

Query: 434 GMLIVRPVKALFATQSTFKMVEGTQ------AIGQKIVYCIGNIVNILLALYKCQSMGLL 595
            ML+V P+KA+ +T S F   +GT       A+G    Y +  ++ + + +YK Q MGLL
Sbjct: 109 LMLLVNPLKAITSTGSAFTPFKGTHPGTLWPAMG---AYILFQLLLMGIGVYKLQRMGLL 165


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 164 SQLKSNKKLKWALDFNQKNKQLSTE 238
           SQ   N+++KW  DFN K K L  E
Sbjct: 620 SQAALNRRVKWENDFNNKIKALREE 644


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = +2

Query: 152 IVTMSQLKSNKKLKWALDFNQKNKQLSTELPSPPGYSQSSNANYAESSKDSDSNLLLIKK 331
           I+  + L S  +  W      +N+  +  +PSPP  SQ       E  K   S +L   K
Sbjct: 264 IIAATPLNSQTQASWVAQ--PENQAYANLIPSPPTTSQILPTELTEEEKQLRSKVLFYLK 321


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 243 PHPQVTVSLQTLIMPNHQKIQT 308
           P PQ+    QT+++  H+++QT
Sbjct: 107 PRPQLNAQEQTMLLVRHRQLQT 128


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 185 KLKWALDFNQKNKQLSTELPSPPGYSQSSNANYAESSKDSDSNLLLIKK 331
           ++K + D  +   + STELPS    S   + N  ES    D N+  ++K
Sbjct: 169 RIKASPDRKKFEPRRSTELPSKIPSSTPKDDNVQESPAFPDENITALQK 217


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 209 NQKNKQLSTELPSPPGYSQSSNANYAESSKDSDSNLLLIKKL 334
           N KN +L    P P  +S+     + +  +D+DS +  ++ L
Sbjct: 614 NLKNMELDDPAPQPAKHSRVDRYEHPKVLEDNDSTISSLESL 655


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +2

Query: 140 FFTWIVTMSQLKSNKKLKWALDFNQKNKQLSTELPSPPGYSQSSNANYA 286
           FF    + ++  S +K      FN +NK  S+E       SQS   N A
Sbjct: 99  FFPQTASSNKTFSKRKRSSENSFNNRNKAKSSETSDSSNTSQSFKENRA 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,785
Number of Sequences: 5004
Number of extensions: 52478
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)