Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26g18
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006833-2|AAF60946.1|  174|Caenorhabditis elegans Hypothetical ...   127   7e-30
AL031627-17|CAA20950.2|  344|Caenorhabditis elegans Hypothetical...    29   1.9  
Z81489-1|CAB04005.2|  266|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>AC006833-2|AAF60946.1|  174|Caenorhabditis elegans Hypothetical
           protein ZK616.6 protein.
          Length = 174

 Score =  127 bits (306), Expect = 7e-30
 Identities = 67/143 (46%), Positives = 96/143 (67%), Gaps = 9/143 (6%)
 Frame = +2

Query: 194 WALDFNQKNKQLSTELPS--PPG-YSQSSNANY-AESSKDSDSNLLLIKK-LWDVALGPL 358
           W LD+   +K   T   +  PPG YS ++   + AE+ + +D +  L +K +WD A+GP 
Sbjct: 6   WKLDYTYSSKNCRTADSNFNPPGFYSTAATVQHSAEADRSADQHEHLARKRVWDTAMGPA 65

Query: 359 KQVPMNLFIMYMAGNSISIFPIMMVGMLIVRPVKALFATQSTFKMVE----GTQAIGQKI 526
           K +PMN+F+MYMAG  +SIFPIMMVGM++ RP+KALFA  STFK +E    G+  I  K+
Sbjct: 66  KSLPMNMFMMYMAGGGVSIFPIMMVGMMVFRPLKALFAVNSTFKPLESPATGSMFI-HKL 124

Query: 527 VYCIGNIVNILLALYKCQSMGLL 595
           ++C+GN+  I LA+YK  +MGLL
Sbjct: 125 IFCLGNLGAIGLAIYKVHTMGLL 147


>AL031627-17|CAA20950.2|  344|Caenorhabditis elegans Hypothetical
           protein Y102A5C.28 protein.
          Length = 344

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = -1

Query: 558 RMFTIFPIQ*TIFCPIACVPSTILKVLCVANSAFTGLTINMPTIIIGNIEIELPAMYIIK 379
           ++F     Q T+   +  +P TIL   CV N  F   ++     +   I+  LP ++I+K
Sbjct: 244 QLFLALVCQATVPLILMHIPVTILYTCCVLNIVFNPFSVATTIALFPAID-PLPTIFIVK 302

Query: 378 RFMGTCFK 355
            +    F+
Sbjct: 303 NYRVALFE 310


>Z81489-1|CAB04005.2|  266|Caenorhabditis elegans Hypothetical
           protein C55A1.1 protein.
          Length = 266

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -1

Query: 561 KRMFTIFPIQ*TIFCPIACVPSTILKVLCVANSAFTGLTINMPTIIIGNIEIELPAMYII 382
           K++F     Q T+   +  +P T+L   CV N  F   ++     +   I+  LP ++I+
Sbjct: 206 KQLFVALVFQATVPLILMHIPVTVLYTCCVFNIVFDTFSVATTIALFPAID-PLPTIFIV 264

Query: 381 K 379
           K
Sbjct: 265 K 265


>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical
           protein F35G12.8 protein.
          Length = 1549

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 185 KLKWALD-FNQKNKQLSTELPSPPGYSQSSNANYAES 292
           KLK   D +N K KQLSTELP+    ++  N + A++
Sbjct: 549 KLKPEFDSWNDKLKQLSTELPTLRNTARQKNQDLAKT 585


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,538,142
Number of Sequences: 27780
Number of extensions: 285349
Number of successful extensions: 788
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)