Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26g16
(536 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 181 5e-47
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 92 6e-20
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 83 3e-17
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 72 5e-14
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 71 1e-13
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 70 3e-13
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 66 4e-12
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 61 9e-11
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 58 6e-10
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 58 1e-09
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 57 2e-09
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 51 1e-07
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 48 1e-06
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 30 0.19
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 29 0.44
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 28 1.0
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 28 1.0
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 27 1.8
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 27 2.3
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 25 5.4
SPCC1393.11 |||mitochondrial ribosomal protein subunit L20|Schiz... 25 5.4
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 7.2
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 9.5
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 9.5
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.5
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 25 9.5
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2... 25 9.5
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 181 bits (441), Expect = 5e-47
Identities = 75/115 (65%), Positives = 90/115 (78%)
Frame = +3
Query: 174 MSGIASARLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTPWEGGLYKL 353
MS + RL EERK WR+DHPFGF A+P K+ DG L+LM W+ IPGK T WEGGLYKL
Sbjct: 1 MSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKL 60
Query: 354 RMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKANFVG 518
M F ++YP+ PPKC+F PPLFHPNVYPSGTVCLS+L+EE+ W+PAITIK +G
Sbjct: 61 TMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLG 115
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 91.9 bits (218), Expect = 6e-20
Identities = 45/99 (45%), Positives = 54/99 (54%)
Frame = +3
Query: 183 IASARLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTPWEGGLYKLRMI 362
+A RL +E K ++ P G A P D TW+C I G GTP+EGGLY +
Sbjct: 5 MALRRLMKEYKELTENGPDGITAGPSNEDD----FFTWDCLIQGPDGTPFEGGLYPATLK 60
Query: 363 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 479
F DYP PP KFE FHPNVY GTVC+S+L D
Sbjct: 61 FPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGD 99
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 82.6 bits (195), Expect = 3e-17
Identities = 42/111 (37%), Positives = 59/111 (53%)
Frame = +3
Query: 174 MSGIASARLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTPWEGGLYKL 353
MS A RL + K ++D P G A P+ + N+M W I G TP+E G +KL
Sbjct: 1 MSTTARRRLMRDFKRMQQDPPAGVSASPVSD-----NVMLWNAVIIGPADTPFEDGTFKL 55
Query: 354 RMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKA 506
+ F + YP+ PP KF +FHPNVY +G +CL +L + W P + A
Sbjct: 56 VLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDIL--QNRWSPTYDVAA 104
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 72.1 bits (169), Expect = 5e-14
Identities = 36/103 (34%), Positives = 58/103 (56%)
Frame = +3
Query: 195 RLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTPWEGGLYKLRMIFKDD 374
R+ +E + +D P G VA P ++ NL ++ + G + + +EGG + L + D+
Sbjct: 6 RIIKEIETLTRDPPPGIVAAPTED-----NLRYFKITMEGPQQSAYEGGKFHLELFLPDE 60
Query: 375 YPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIK 503
YP PP +F ++HPNV G +CLS L +KDW PA+ I+
Sbjct: 61 YPMMPPNVRFLTKIYHPNVDKLGRICLSTL--KKDWSPALQIR 101
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 70.9 bits (166), Expect = 1e-13
Identities = 36/106 (33%), Positives = 57/106 (53%)
Frame = +3
Query: 183 IASARLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTPWEGGLYKLRMI 362
+A R+ E KD P A P+ + +L W+ I G +P+ GG++ L +
Sbjct: 1 MALKRINRELADLGKDPPSSCSAGPVGD-----DLFHWQATIMGPADSPYAGGVFFLSIH 55
Query: 363 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITI 500
F DYP PPK F ++HPN+ +G++CL +L ++ W PA+TI
Sbjct: 56 FPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ--WSPALTI 99
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 69.7 bits (163), Expect = 3e-13
Identities = 35/101 (34%), Positives = 54/101 (53%)
Frame = +3
Query: 177 SGIASARLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTPWEGGLYKLR 356
S + L ++ K +K+ P GF + + ++ WE I G + T +EGG +
Sbjct: 3 SSASEQLLRKQLKEIQKNPPQGFSVGLVDDK----SIFEWEVMIIGPEDTLYEGGFFHAT 58
Query: 357 MIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD 479
+ F DYP PPK KF ++HPNV+P+G VC+S+L D
Sbjct: 59 LSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGD 99
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 65.7 bits (153), Expect = 4e-12
Identities = 29/69 (42%), Positives = 40/69 (57%)
Frame = +3
Query: 267 PDGSLNLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGT 446
PD NL+ W I G T +EG +K+ M F +YP SPP F P++HPNV SG
Sbjct: 52 PDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGN 111
Query: 447 VCLSLLDEE 473
+CL +L ++
Sbjct: 112 ICLDILKDK 120
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 61.3 bits (142), Expect = 9e-11
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Frame = +3
Query: 174 MSGIASARLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTPWEGGLYKL 353
MS S R+A+E ++D G + + L M G +GTP+EGG + +
Sbjct: 1 MSDNRSRRIAKELADVQQDKQAGIQVWTINDDISHLKGM-----FRGPEGTPYEGGYFVV 55
Query: 354 RMIFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSLLDEEKDWRPAITIKANFV 515
+ DYP PPK F+ ++HPNV +G +CL +L ++ W P T+K+ +
Sbjct: 56 DIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQ--WSPVYTMKSALI 108
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 58.4 bits (135), Expect = 6e-10
Identities = 24/63 (38%), Positives = 38/63 (60%)
Frame = +3
Query: 330 WEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKAN 509
++GG +K R+ D+YP PPK K ++HPN+ G VCL++L +DW P + + +
Sbjct: 65 YKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNIL--RQDWNPVLNLNSI 122
Query: 510 FVG 518
VG
Sbjct: 123 LVG 125
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 57.6 bits (133), Expect = 1e-09
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +3
Query: 267 PDGSLNLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNV-YPSG 443
P +++ W+ I G TP+EGG + L + + YP SPP F+ + HPN+ + +G
Sbjct: 28 PVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNG 87
Query: 444 TVCLSLLDEEKDWRPAITIKA 506
VC+ +L + W PA ++++
Sbjct: 88 EVCMDIL--KTHWSPAWSLQS 106
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 56.8 bits (131), Expect = 2e-09
Identities = 24/75 (32%), Positives = 42/75 (56%)
Frame = +3
Query: 282 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSL 461
NL W C G + + GG + + F DYP PP +F ++HPN G VCL++
Sbjct: 35 NLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAI 94
Query: 462 LDEEKDWRPAITIKA 506
L +++ ++P+I +++
Sbjct: 95 L-KQQVFKPSIKLRS 108
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 51.2 bits (117), Expect = 1e-07
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 282 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSL 461
N++ W I G TP+EGG Y +IF DYP PP + P + +CLS
Sbjct: 33 NILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITP--SGRFQTNTRLCLSF 90
Query: 462 LD-EEKDWRPAITIKANFVG 518
D K W P+ + VG
Sbjct: 91 SDFHPKSWNPSWMVSTILVG 110
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 47.6 bits (108), Expect = 1e-06
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 282 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLS 458
N+ + G TP+ GG++K+ + +YP P F +FHPN+ SG+VCL
Sbjct: 28 NMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLD 87
Query: 459 LLDEEKDWRP 488
++++ W P
Sbjct: 88 VINQ--TWSP 95
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 30.3 bits (65), Expect = 0.19
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = -2
Query: 403 NLHFGGLDG*SSLKIIRSLYSPPSHGVPFLPGIAHSQVI-KFNEPS---GFFIGLATK 242
N F G+ L + S SP HG P +PG+ H+ + + EPS F GL +K
Sbjct: 442 NPQFSGVLNLPGLGTMPSFPSPYQHGQPQIPGMLHASLSNSYAEPSTQNSFIPGLTSK 499
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 29.1 bits (62), Expect = 0.44
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
Frame = +3
Query: 195 RLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTPWEGGLYKLRMIFKDD 374
+L EE + K + + N D + L W I G + E +Y L++ +
Sbjct: 9 KLLEELEKGEKGLGESSCSYGLTNAD-DITLSDWNATILGPAHSVHENRIYSLKIHCDAN 67
Query: 375 YPSSPPKCKFEPPLFHPNV-YPSGTVCLSLLDEEKDWR 485
YP +PP F + P V +G V +D + W+
Sbjct: 68 YPDAPPIVTFVSRINLPGVDGETGKVNPHKIDCLRHWK 105
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 27.9 bits (59), Expect = 1.0
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 345 TAHLPMESPFYQVSHIPKSLNSMNHLDSS*ASRQNQRDGPYAKLSVLQLN 196
T+ +P PFY S +SLN+ H + + PYAKLS N
Sbjct: 613 TSPIPAR-PFYAQSGSLQSLNTTQHSHQISGGHSGRMNVPYAKLSYTSHN 661
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -2
Query: 232 WSLRQAFRSSAKRALAIPDIFYKNNSIYEPSFNQGL 125
W LR+ +S++ + ++F K NSIY +F++ L
Sbjct: 71 WQLREQEQSNSHISRNENELFSKENSIYNGNFSENL 106
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 526 LEYPTKFAFIVIAGR--QSFSSSSSDKHTVPDGYTLG 422
L+Y K+ F G+ +SF SSSS +T + TLG
Sbjct: 5 LQYADKYVFDTFYGKIAESFDSSSSFANTAVNSTTLG 41
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 234 PFGFVARPMKNPDGSLNLMTWECAIPGKKGTPWEGGLYK 350
P V+R + L+ TW C++ G+ G +G L+K
Sbjct: 123 PSKVVSRKHAVVEYDLDDQTWNCSVYGRNGIKVDGKLFK 161
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 174 FSTKITRFMSRASIKDYS*CWAID 103
FS +ITRF R D+ CW D
Sbjct: 343 FSAEITRFADRNFYDDWWNCWTWD 366
>SPCC1393.11 |||mitochondrial ribosomal protein subunit
L20|Schizosaccharomyces pombe|chr 3|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 378 PSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKANFVGYSRSS 533
P+S P + PP+F + P SL E PA++ K+ G R S
Sbjct: 56 PASSPDVRITPPVFRYDAPPIHQRDTSLSKESMFLPPAVSRKSKSKGKLRFS 107
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 490 AGRQSFSSSSSDKHTVPDGYTLGWNSGGSNL 398
A +QS+ + SSD ++P L +NS G +
Sbjct: 249 ASQQSYINHSSDGASLPQSSFLNFNSSGKRV 279
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +1
Query: 394 NANLNHHCSTPMCIHQVRCACHCLMKKKIG 483
N+N ++ CIH V CH +K G
Sbjct: 87 NSNFDNRVGVIECIHLVNFMCHDSLKINFG 116
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 277 EPSGFFIGLATKPKGWSLRQAFRSSAKRALA 185
E SGF + L ++ + WSL + S LA
Sbjct: 773 EDSGFSLKLCSEVQEWSLNKVLNGSINEKLA 803
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 24.6 bits (51), Expect = 9.5
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = -3
Query: 267 DSS*ASRQNQRDGPYAKLSVL----QLNVHLLSLTFSTKITRFMSRASIKDYS 121
DSS +S ++DGPY K+ L + L S TF+ T F+ I+DYS
Sbjct: 204 DSSFSSIYFRKDGPYHKVEKLLKSANIRSSLNSKTFNDFRTLFL--LLIRDYS 254
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +1
Query: 352 YV*SSKMIIHQVLQNANLNHHCSTPMCI 435
YV S + Q+L+ + HHC +P +
Sbjct: 96 YVGSDSKLQKQILRELGVLHHCRSPYIV 123
>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 825
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 313 VKRGLHGKVGCINYV*SS 366
++ G HGK G +NYV SS
Sbjct: 537 LETGWHGKFGSLNYVTSS 554
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,626
Number of Sequences: 5004
Number of extensions: 49662
Number of successful extensions: 127
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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