Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26g15
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098505-3|AAL27269.2|  578|Caenorhabditis elegans Hypothetical ...    29   2.2  
AF098505-2|AAC67416.2|  814|Caenorhabditis elegans Hypothetical ...    29   2.2  
AF078790-7|AAC26936.1|  272|Caenorhabditis elegans Hypothetical ...    29   2.9  
U41277-8|AAA82479.1|  285|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z78019-2|CAB01451.1|  347|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF098505-3|AAL27269.2|  578|Caenorhabditis elegans Hypothetical
           protein Y71H10A.1b protein.
          Length = 578

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 255 AIASTAHFCFVPWWP 211
           A+AS A FCF+P WP
Sbjct: 47  ALASEADFCFIPEWP 61


>AF098505-2|AAC67416.2|  814|Caenorhabditis elegans Hypothetical
           protein Y71H10A.1a protein.
          Length = 814

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 255 AIASTAHFCFVPWWP 211
           A+AS A FCF+P WP
Sbjct: 250 ALASEADFCFIPEWP 264


>AF078790-7|AAC26936.1|  272|Caenorhabditis elegans Hypothetical
           protein F36H12.14 protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 521 NPRSVGERKIRIGRSGVQTQRAKEHAAIQNRFNDRARNFIFYNFA 387
           N + + +   R+G   ++ Q    HA +   FN+ A+N+ FYNFA
Sbjct: 184 NAKQLNQEATRVGIKPIEIQ----HAVLP--FNNPAKNYHFYNFA 222


>U41277-8|AAA82479.1|  285|Caenorhabditis elegans Hypothetical
           protein C06E4.8 protein.
          Length = 285

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 318 ALLFGNAQESHVKETNGIMLDHMREIIKNKI 410
           A  FG  +   + E NG M  H+ EIIKN++
Sbjct: 122 AEFFGMNETLKIIEENGDMYGHLTEIIKNRM 152


>Z78019-2|CAB01451.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK863.5 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +3

Query: 321 LLFGNAQESHVKETNGIMLDHMREIIKNKITSAVVETVLDCGMFFSSL 464
           +++G  ++ H K  N I+   +RE  +    +  V+T++     FSS+
Sbjct: 200 IMYGLRRKIHFKLRNAILRPEIREKHRQLTWALTVQTIVPIAFIFSSI 247


>AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical
           protein F43C11.8 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 96  FNNYVKTIELSRAQLSRWRSNKDIHP-KPLDRAEILRVEKATRGQSKNELWT 248
           F N +   ELS +   + R + ++     +  A++L V  A    S+NELWT
Sbjct: 232 FTNDLLIAELSESLNRQKRKSAELKLFMKMSNADLLAVNSALEVSSENELWT 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,796,329
Number of Sequences: 27780
Number of extensions: 257650
Number of successful extensions: 657
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)