Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26g12
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    48   7e-07
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    27   1.9  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   4.3  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.7  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   5.7  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    25   7.5  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 48.4 bits (110), Expect = 7e-07
 Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 23/153 (15%)
 Frame = +1

Query: 154 SFKLIVHQSSFSPEDLIINLKDYPGLKEKDIVEIYHPENDY------------------- 276
           +  L  H+SS  P D ++N    P  K  DI EI     D                    
Sbjct: 4   TLNLWTHESSLFPNDAVLNYDLVPSAKPGDIFEIRAQNGDEIALQHNHSSTGKLHAKREK 63

Query: 277 -PRLLLQVTKVDAPGRGRDTI--SVEQSIATTFQLRTFADVYVNIVNVQ-DVALDSVELT 444
            P  L+     D   R    +  SV   I++   ++    V V I   + ++  + V + 
Sbjct: 64  EPVYLMPSPLTDDLKRRHPNLQLSVVSHISSLLNIKNREPVVVKICEDKTNLEAEHVVIF 123

Query: 445 FKDQYLGRSEMWRLKNHLVSTCVYLNQKIEYCG 543
           F+DQ++ RS+MW+L   L   CVYL Q++ + G
Sbjct: 124 FRDQFISRSDMWKLFRELCGKCVYLKQRVSFIG 156


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 496 LVSTCVYLNQKIEYCGGAIR 555
           LV+TC+YL+ K+E C   IR
Sbjct: 78  LVATCIYLSCKVEECPVHIR 97


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 112  LKHAI*NIRNTTMKSFKLIVHQSSFSPEDLIINLKD 219
            L H   ++RNT  ++ + I + S  S  DL++ +KD
Sbjct: 1258 LLHPNDHVRNTVQQAIENISNNSKLSVVDLLLPIKD 1293


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 199 LIINLKDYPGLKEKDIVEIYHPENDYPRLLLQVTKVDAP 315
           L INL  +   K+ +++E++ P NDY   L+   + D+P
Sbjct: 309 LFINL--HFNQKDLNLIEVWTPPNDYTYALVVDLQPDSP 345


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 389 TSANVRSWKVVAILCSTLIVSL 324
           TS  +R WK++ I+C  L + L
Sbjct: 215 TSLPMRGWKLIFIICGVLAIFL 236


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 112 LKHAI*NIRNTTMKSFKLIVHQSSFSPEDL 201
           L   I N R+   K   +++H+S FSPE++
Sbjct: 126 LHELIHNWRSANGKVIDILMHESVFSPEEV 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,232
Number of Sequences: 5004
Number of extensions: 48305
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)